Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Pus1-207ENSMUST00000170468 1510 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Trim28Q62318 Ppdpf-202ENSMUST00000108841 689 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Cryba4-202ENSMUST00000112383 754 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Gm7030-203ENSMUST00000173322 913 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC19.43■□□□□ 0.7
Trim28Q62318 Wfdc2-201ENSMUST00000017867 849 ntAPPRIS P2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Mir99ahg-211ENSMUST00000183099 1189 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Gm27533-201ENSMUST00000183800 152 ntBASIC19.43■□□□□ 0.7
Trim28Q62318 Gm7030-201ENSMUST00000046131 913 ntAPPRIS P1 TSL 5 BASIC19.43■□□□□ 0.7
Trim28Q62318 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Snx8-205ENSMUST00000196566 1914 ntAPPRIS ALT2 TSL 5 BASIC19.43■□□□□ 0.7
Trim28Q62318 Irgq-201ENSMUST00000049020 6083 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Spock1-203ENSMUST00000185905 2794 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Zswim8-208ENSMUST00000224751 5951 ntAPPRIS ALT2 BASIC19.42■□□□□ 0.7
Trim28Q62318 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Gm13034-201ENSMUST00000121342 3177 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Zfp691-201ENSMUST00000052715 2341 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Homez-202ENSMUST00000142283 4713 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Sec24a-203ENSMUST00000109092 2094 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Med26-201ENSMUST00000058534 2997 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Runx1t1-201ENSMUST00000006761 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Sprn-201ENSMUST00000059241 3374 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Gm39244-202ENSMUST00000210837 1857 ntTSL 5 BASIC19.42■□□□□ 0.7
Trim28Q62318 Gm11615-201ENSMUST00000156205 818 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC19.42■□□□□ 0.7
Trim28Q62318 Gm29310-201ENSMUST00000185468 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21825-201ENSMUST00000185728 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm29109-201ENSMUST00000185895 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21896-201ENSMUST00000186520 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21873-201ENSMUST00000186728 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21794-201ENSMUST00000187056 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21880-201ENSMUST00000187275 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21826-201ENSMUST00000187451 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21198-201ENSMUST00000188393 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21749-201ENSMUST00000189343 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21901-201ENSMUST00000189568 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm29424-201ENSMUST00000189716 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm28599-201ENSMUST00000189838 694 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21867-201ENSMUST00000189917 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm29269-201ENSMUST00000190087 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21722-201ENSMUST00000190153 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm28423-201ENSMUST00000190701 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21899-201ENSMUST00000190745 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21910-201ENSMUST00000191163 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21849-201ENSMUST00000191571 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm28678-201ENSMUST00000191593 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm20910-201ENSMUST00000193268 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Gm21871-201ENSMUST00000194621 696 ntBASIC19.42■□□□□ 0.7
Trim28Q62318 Pts-201ENSMUST00000034570 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Pabpn1l-201ENSMUST00000093059 1148 ntAPPRIS P2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Mars-201ENSMUST00000037290 2939 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 4930425O10Rik-201ENSMUST00000197761 1418 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Rogdi-201ENSMUST00000023191 1431 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
Trim28Q62318 Siglece-201ENSMUST00000032667 1849 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Ccr9-202ENSMUST00000163559 3004 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Cpeb2-204ENSMUST00000166713 6846 ntAPPRIS ALT2 TSL 5 BASIC19.41■□□□□ 0.7
Trim28Q62318 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Lcorl-202ENSMUST00000045586 5708 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Elk4-201ENSMUST00000027696 1586 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC19.41■□□□□ 0.7
Trim28Q62318 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Gm13453-201ENSMUST00000118708 357 ntBASIC19.41■□□□□ 0.7
Trim28Q62318 Gm14057-201ENSMUST00000120631 482 ntBASIC19.41■□□□□ 0.7
Trim28Q62318 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Haghl-203ENSMUST00000133071 1128 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Gm9726-201ENSMUST00000180321 678 ntBASIC19.41■□□□□ 0.7
Trim28Q62318 Smim22-206ENSMUST00000184256 381 ntTSL 3 BASIC19.41■□□□□ 0.7
Trim28Q62318 Zfp787-205ENSMUST00000207957 880 ntTSL 5 BASIC19.41■□□□□ 0.7
Trim28Q62318 Gm6888-201ENSMUST00000221983 706 ntBASIC19.41■□□□□ 0.7
Trim28Q62318 Polr2j-201ENSMUST00000041366 646 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Hes5-201ENSMUST00000049621 1273 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 AI606473-201ENSMUST00000177201 1731 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Rgs6-203ENSMUST00000185665 2201 ntAPPRIS P4 TSL 5 BASIC19.41■□□□□ 0.7
Trim28Q62318 Sbf1-201ENSMUST00000123791 6190 ntAPPRIS P3 TSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Nt5dc2-201ENSMUST00000090212 1407 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
Trim28Q62318 Rassf8-203ENSMUST00000111704 5446 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
Trim28Q62318 Zufsp-205ENSMUST00000218880 2005 ntTSL 5 BASIC19.41■□□□□ 0.7
Trim28Q62318 Eldr-203ENSMUST00000130392 1540 ntTSL 2 BASIC19.41■□□□□ 0.7
Trim28Q62318 Prkg1-206ENSMUST00000182685 1628 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Plk1-201ENSMUST00000033154 2199 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Slc29a4-201ENSMUST00000058418 2789 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Ccdc43-205ENSMUST00000164506 2316 ntAPPRIS ALT1 TSL 5 BASIC19.4■□□□□ 0.7
Trim28Q62318 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC19.4■□□□□ 0.7
Trim28Q62318 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Gata6-201ENSMUST00000047762 3194 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Gm27680-201ENSMUST00000184192 160 ntBASIC19.4■□□□□ 0.7
Trim28Q62318 Gm33337-201ENSMUST00000219594 228 ntTSL 3 BASIC19.4■□□□□ 0.7
Trim28Q62318 Dkkl1-201ENSMUST00000033057 1149 ntAPPRIS P2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Bnc1-201ENSMUST00000026096 4646 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Atat1-203ENSMUST00000077494 1340 ntAPPRIS ALT2 TSL 1 (best) BASIC19.4■□□□□ 0.7
Trim28Q62318 Fam174b-201ENSMUST00000107456 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 20.8 ms