Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Ccdc157-202ENSMUST00000101626 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Cxcr5-201ENSMUST00000062215 2614 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Rbsn-201ENSMUST00000014694 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Wdr31-203ENSMUST00000120095 2549 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Zkscan4-202ENSMUST00000225845 1506 ntBASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Repin1-201ENSMUST00000009420 3145 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Sema5b-202ENSMUST00000120756 4646 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Rnf208-202ENSMUST00000114355 1333 ntAPPRIS P1 BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Foxo4-201ENSMUST00000062000 3162 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Map3k14-201ENSMUST00000021324 4246 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Trim40Q3UWA4 Taok2-201ENSMUST00000071268 4720 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Cdk5r1-201ENSMUST00000053413 4162 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Gpr153-202ENSMUST00000105650 3838 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ppp1r1b-206ENSMUST00000150762 1801 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 D430041D05Rik-201ENSMUST00000089726 10124 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Cndp2-201ENSMUST00000025546 2050 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ralgapb-201ENSMUST00000046274 8366 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Atp2a3-201ENSMUST00000021142 4593 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Carlr-201ENSMUST00000181515 2574 ntBASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Fstl4-201ENSMUST00000036796 4380 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Gm14722-201ENSMUST00000118943 689 ntBASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Gm26827-201ENSMUST00000181911 148 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Mir6982-201ENSMUST00000184354 68 ntBASIC14.13□□□□□ -0.15
Trim40Q3UWA4 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Prm2-201ENSMUST00000037996 621 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Nkx2-9-201ENSMUST00000072631 1264 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Chmp1a-201ENSMUST00000000759 2140 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ppt1-202ENSMUST00000097902 1191 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Tmem110-201ENSMUST00000006701 3742 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ylpm1-207ENSMUST00000168977 4893 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Cmtm1-202ENSMUST00000160596 1900 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Evc-201ENSMUST00000031005 4325 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Syndig1-201ENSMUST00000109934 2081 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Ahdc1-202ENSMUST00000105914 5898 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC14.13□□□□□ -0.15
Trim40Q3UWA4 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Abi3-201ENSMUST00000059026 4006 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Elovl6-205ENSMUST00000199910 2610 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Prox1-201ENSMUST00000010319 3285 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Scara5-202ENSMUST00000069226 3262 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Lman2-201ENSMUST00000021940 4315 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Nsfl1c-201ENSMUST00000028949 1364 ntAPPRIS ALT1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Pnn-201ENSMUST00000021381 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Otop2-201ENSMUST00000055490 2335 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Srpx-201ENSMUST00000044789 2477 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Arl11-202ENSMUST00000224727 2095 ntAPPRIS P1 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Tsc2-221ENSMUST00000228412 5432 ntAPPRIS ALT2 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Mir770-201ENSMUST00000103252 94 ntBASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Gm12008-201ENSMUST00000117791 755 ntBASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Gm17349-201ENSMUST00000163472 300 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 4930579K19Rik-202ENSMUST00000190541 632 ntTSL 2 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 H2afz-201ENSMUST00000041045 1069 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Cltb-201ENSMUST00000049575 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Gfm2-211ENSMUST00000161913 1829 ntTSL 2 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Gm8242-201ENSMUST00000193029 1420 ntBASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Reep4-201ENSMUST00000047218 1565 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Marveld2-203ENSMUST00000168772 1888 ntAPPRIS P1 TSL 5 BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Tbx3os2-201ENSMUST00000135385 1345 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Cmc2-205ENSMUST00000148235 1459 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Trim40Q3UWA4 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Anks1b-231ENSMUST00000183136 2786 ntTSL 5 BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Dimt1-201ENSMUST00000022203 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Ppif-201ENSMUST00000022419 1549 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Mtrr-209ENSMUST00000223398 3861 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Vwa2-201ENSMUST00000026068 4049 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
Trim40Q3UWA4 Uba3-201ENSMUST00000089287 2257 ntAPPRIS P4 TSL 1 (best) BASIC14.11□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 29.7 ms