Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Chst11-201ENSMUST00000040110 5527 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.7■□□□□ 0.42
Limch1Q3UH68 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.7■□□□□ 0.42
Limch1Q3UH68 Csnk2a2-201ENSMUST00000056919 3773 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Samd4-211ENSMUST00000228404 3039 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Mon1b-201ENSMUST00000035777 4998 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Usp4-201ENSMUST00000035237 3662 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Caly-202ENSMUST00000166758 1220 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Gm45231-201ENSMUST00000208629 1064 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 CT009510.1-201ENSMUST00000227972 270 ntBASIC17.69■□□□□ 0.42
Limch1Q3UH68 Mrps36-202ENSMUST00000078573 571 ntAPPRIS ALT1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Galnt13-202ENSMUST00000112634 7639 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.69■□□□□ 0.42
Limch1Q3UH68 Gm11873-201ENSMUST00000117877 1304 ntBASIC17.69■□□□□ 0.42
Limch1Q3UH68 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Smyd4-201ENSMUST00000044530 3517 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Mri1-203ENSMUST00000126435 2819 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Vps25-203ENSMUST00000100414 1220 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Tmem9-205ENSMUST00000165125 901 ntAPPRIS P1 TSL 3 BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 AC151286.1-201ENSMUST00000198489 145 ntBASIC17.68■□□□□ 0.42
Limch1Q3UH68 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 9430038I01Rik-201ENSMUST00000068996 1126 ntAPPRIS P2 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Chchd2-201ENSMUST00000094280 915 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.68■□□□□ 0.42
Limch1Q3UH68 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Gm10044-203ENSMUST00000166813 1471 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Prss22-201ENSMUST00000041649 1323 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Ctnna2-204ENSMUST00000160894 4162 ntTSL 1 (best) BASIC17.68■□□□□ 0.42
Limch1Q3UH68 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Cbln3-202ENSMUST00000172378 1438 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.67■□□□□ 0.42
Limch1Q3UH68 Gm26308-201ENSMUST00000157768 69 ntBASIC17.67■□□□□ 0.42
Limch1Q3UH68 AC174742.1-201ENSMUST00000218272 304 ntBASIC17.67■□□□□ 0.42
Limch1Q3UH68 Bloc1s5-203ENSMUST00000224902 612 ntBASIC17.67■□□□□ 0.42
Limch1Q3UH68 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Gpam-201ENSMUST00000061856 3832 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Rpl30-202ENSMUST00000079735 886 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.67■□□□□ 0.42
Limch1Q3UH68 Faf1-201ENSMUST00000102724 4468 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Celf4-206ENSMUST00000224553 1729 ntBASIC17.67■□□□□ 0.42
Limch1Q3UH68 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.67■□□□□ 0.42
Limch1Q3UH68 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 C920006O11Rik-201ENSMUST00000180974 1444 ntTSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Atp6v0d1-201ENSMUST00000013304 1629 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Gata4-202ENSMUST00000118022 3374 ntAPPRIS P3 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Fis1-202ENSMUST00000111094 948 ntTSL 2 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Naa10-203ENSMUST00000114387 979 ntAPPRIS ALT2 TSL 2 BASIC17.66■□□□□ 0.42
Limch1Q3UH68 Gm11453-201ENSMUST00000117318 1007 ntBASIC17.66■□□□□ 0.42
Limch1Q3UH68 Med11-202ENSMUST00000151013 445 ntTSL 2 BASIC17.66■□□□□ 0.42
Retrieved 100 of 76,532 protein–RNA pairs in 38.3 ms