Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Gm30191-201ENSMUST00000205501 647 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 AC166341.4-201ENSMUST00000220625 123 ntBASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gzma-201ENSMUST00000023897 878 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Nhlrc4-201ENSMUST00000085027 2142 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Gm6594-201ENSMUST00000097278 288 ntAPPRIS P1 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Stra8-201ENSMUST00000031876 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Wwox-207ENSMUST00000160862 1715 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Rabggta-201ENSMUST00000062861 2338 ntTSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 I0C0044D17Rik-201ENSMUST00000097964 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.99□□□□□ -0.33
Nkx3-1P97436 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Aarsd1-201ENSMUST00000070395 1516 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Slc8b1-202ENSMUST00000076051 2661 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Sike1-201ENSMUST00000029447 7375 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Ankrd50-202ENSMUST00000120875 4945 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Pald1-201ENSMUST00000020289 4282 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Apeh-206ENSMUST00000193254 2518 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Tmtc4-204ENSMUST00000126867 2952 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Rnf170-209ENSMUST00000209300 1881 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Bcs1l-201ENSMUST00000027358 1890 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Sybu-203ENSMUST00000110269 2920 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Kir3dl1-201ENSMUST00000113104 1031 ntTSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Rhox2d-201ENSMUST00000115179 685 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Chchd7-208ENSMUST00000121651 620 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Gm14104-201ENSMUST00000135990 356 ntTSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Gm16026-204ENSMUST00000162652 683 ntBASIC12.98□□□□□ -0.33
Nkx3-1P97436 Gm10044-204ENSMUST00000170177 659 ntTSL 3 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Styxl1-207ENSMUST00000177559 1236 ntAPPRIS P1 TSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Gm7556-201ENSMUST00000201178 1084 ntBASIC12.98□□□□□ -0.33
Nkx3-1P97436 Gm39228-201ENSMUST00000212456 301 ntTSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Tpi-rs5-201ENSMUST00000216947 774 ntBASIC12.98□□□□□ -0.33
Nkx3-1P97436 AC126408.1-201ENSMUST00000225184 523 ntBASIC12.98□□□□□ -0.33
Nkx3-1P97436 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Chchd7-201ENSMUST00000041122 672 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Klk1-201ENSMUST00000075162 954 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Fads3-201ENSMUST00000115995 3269 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Tle3-218ENSMUST00000178113 5205 ntTSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Lca5l-202ENSMUST00000113804 3162 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Zdhhc2-201ENSMUST00000049389 3381 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Mapk8ip1-201ENSMUST00000050312 2930 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Gm42893-201ENSMUST00000198035 1502 ntTSL 3 BASIC12.98□□□□□ -0.33
Nkx3-1P97436 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Rcc2-202ENSMUST00000071169 3999 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Mapt-202ENSMUST00000106988 2202 ntAPPRIS ALT2 TSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 AC133083.1-201ENSMUST00000221736 2209 ntBASIC12.97□□□□□ -0.33
Nkx3-1P97436 Dpagt1-201ENSMUST00000054708 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Tmem119-201ENSMUST00000067853 2242 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Tmem2-201ENSMUST00000025663 6585 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Runx2-202ENSMUST00000113571 5898 ntAPPRIS P3 TSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 AC159621.2-201ENSMUST00000223519 1326 ntBASIC12.97□□□□□ -0.33
Nkx3-1P97436 Rnf145-201ENSMUST00000019333 3570 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Tpm1-214ENSMUST00000113701 1677 ntTSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Matn1-201ENSMUST00000102576 2001 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Olfr533-202ENSMUST00000211093 2397 ntAPPRIS P1 TSL 3 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Pam16-201ENSMUST00000014445 596 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Gm13883-202ENSMUST00000151310 1156 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Gpx4-207ENSMUST00000183037 735 ntTSL 2 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Gm8239-201ENSMUST00000204094 444 ntTSL 2 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Wdyhv1-206ENSMUST00000227142 786 ntBASIC12.97□□□□□ -0.33
Nkx3-1P97436 Hace1-201ENSMUST00000037044 3785 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Zpr1-206ENSMUST00000156440 2984 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Loxl4-205ENSMUST00000171432 2274 ntAPPRIS P3 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Tmod2-207ENSMUST00000215462 1564 ntTSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Fkbp10-202ENSMUST00000107400 1467 ntTSL 5 BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Zfp277-202ENSMUST00000069692 2438 ntAPPRIS ALT2 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Dhcr24-201ENSMUST00000047973 4028 ntAPPRIS P1 TSL 1 (best) BASIC12.97□□□□□ -0.33
Nkx3-1P97436 Gm26917-202ENSMUST00000192833 3329 ntBASIC12.96□□□□□ -0.33
Nkx3-1P97436 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Gm4756-201ENSMUST00000207585 1716 ntTSL 5 BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Trappc2-203ENSMUST00000116495 1613 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Nkx3-1P97436 Zdhhc8-201ENSMUST00000076957 4867 ntAPPRIS P1 TSL 1 (best) BASIC12.96□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 50.5 ms