Protein–RNA interactions for Protein: P53783

Sox1, Transcription factor SOX-1, mousemouse

Predictions only

Length 391 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sox1P53783 Tm7sf2-203ENSMUST00000159084 1351 ntTSL 5 BASIC15.3■□□□□ 0.04
Sox1P53783 Gm21887-201ENSMUST00000178789 441 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Sox1P53783 Swi5-207ENSMUST00000183946 768 ntAPPRIS P3 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Gm45784-201ENSMUST00000188360 142 ntBASIC15.3■□□□□ 0.04
Sox1P53783 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Platr12-202ENSMUST00000189722 549 ntTSL 3 BASIC15.3■□□□□ 0.04
Sox1P53783 Cxcl17-202ENSMUST00000200880 760 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.3■□□□□ 0.04
Sox1P53783 Lonp1-201ENSMUST00000047226 2963 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Rhox2e-201ENSMUST00000072167 799 ntAPPRIS P1 TSL 5 BASIC15.3■□□□□ 0.04
Sox1P53783 Cxcl17-201ENSMUST00000074040 761 ntAPPRIS ALT2 TSL 5 BASIC15.3■□□□□ 0.04
Sox1P53783 Olfr373-201ENSMUST00000074540 945 ntAPPRIS P1 BASIC15.3■□□□□ 0.04
Sox1P53783 Gm5356-201ENSMUST00000093326 615 ntBASIC15.3■□□□□ 0.04
Sox1P53783 Tmem256-201ENSMUST00000094065 492 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Appl2-201ENSMUST00000020500 3020 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Map3k7-201ENSMUST00000037607 5773 ntAPPRIS ALT1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Atp6v1b2-201ENSMUST00000006435 2825 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Rabep1-201ENSMUST00000076270 5408 ntAPPRIS P2 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 Ripor2-202ENSMUST00000058009 2550 ntAPPRIS ALT2 TSL 2 BASIC15.3■□□□□ 0.04
Sox1P53783 Amacr-201ENSMUST00000070877 2577 ntAPPRIS P1 TSL 1 (best) BASIC15.3■□□□□ 0.04
Sox1P53783 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 6030419C18Rik-202ENSMUST00000216294 1601 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Fgf2-208ENSMUST00000200585 5973 ntAPPRIS P2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Slmap-203ENSMUST00000102956 5476 ntAPPRIS P3 TSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 Ablim2-203ENSMUST00000114203 1333 ntTSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 Ice2-203ENSMUST00000117610 800 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Crybb3-204ENSMUST00000119627 828 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Sox1P53783 E130218I03Rik-203ENSMUST00000125921 666 ntAPPRIS P1 TSL 2 BASIC15.29■□□□□ 0.04
Sox1P53783 E130218I03Rik-207ENSMUST00000143448 591 ntAPPRIS P1 TSL 3 BASIC15.29■□□□□ 0.04
Sox1P53783 Gm42791-202ENSMUST00000147473 727 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC15.29■□□□□ 0.04
Sox1P53783 Gm8597-201ENSMUST00000191525 1109 ntBASIC15.29■□□□□ 0.04
Sox1P53783 Gm9728-201ENSMUST00000200197 1055 ntBASIC15.29■□□□□ 0.04
Sox1P53783 Gm45233-201ENSMUST00000203633 898 ntAPPRIS P5 TSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 Gm7067-201ENSMUST00000207698 1249 ntBASIC15.29■□□□□ 0.04
Sox1P53783 Gm20219-201ENSMUST00000209718 1269 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 Gm30934-201ENSMUST00000215803 815 ntTSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Ifnl2-201ENSMUST00000081684 702 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Rpl10-201ENSMUST00000008826 799 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.29■□□□□ 0.04
Sox1P53783 Adnp2-201ENSMUST00000066743 5012 ntAPPRIS P1 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Lhfp-203ENSMUST00000147139 1932 ntAPPRIS P1 TSL 5 BASIC15.29■□□□□ 0.04
Sox1P53783 Hps5-202ENSMUST00000107653 4702 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC15.29■□□□□ 0.04
Sox1P53783 Umad1-202ENSMUST00000159335 2615 ntAPPRIS ALT2 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Ccdc190-201ENSMUST00000094348 1731 ntAPPRIS P3 TSL 1 (best) BASIC15.29■□□□□ 0.04
Sox1P53783 Trhde-201ENSMUST00000061632 5714 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Gnal-201ENSMUST00000025402 5616 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Smpdl3b-201ENSMUST00000030709 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Psmd12-203ENSMUST00000106752 1955 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Eaf2-204ENSMUST00000114829 1030 ntAPPRIS P2 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Rpl28-ps3-201ENSMUST00000116058 393 ntBASIC15.28■□□□□ 0.04
Sox1P53783 Leng8-202ENSMUST00000117274 874 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Gm15236-201ENSMUST00000117309 379 ntBASIC15.28■□□□□ 0.04
Sox1P53783 Nmi-205ENSMUST00000145481 1162 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Gm16570-201ENSMUST00000161951 436 ntBASIC15.28■□□□□ 0.04
Sox1P53783 Gm16476-201ENSMUST00000221544 139 ntBASIC15.28■□□□□ 0.04
Sox1P53783 Ccs-201ENSMUST00000037246 1057 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Mettl5-201ENSMUST00000060447 968 ntAPPRIS P1 TSL 2 BASIC15.28■□□□□ 0.04
Sox1P53783 Cryba4-201ENSMUST00000086629 746 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Gramd4-204ENSMUST00000138134 4292 ntTSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Adcy5-201ENSMUST00000114913 7007 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Zfx-201ENSMUST00000088102 7002 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.28■□□□□ 0.04
Sox1P53783 Olfr160-203ENSMUST00000215727 1667 ntAPPRIS P1 TSL 5 BASIC15.28■□□□□ 0.04
Sox1P53783 Krt73-201ENSMUST00000063292 2165 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC15.28■□□□□ 0.04
Sox1P53783 9330151L19Rik-201ENSMUST00000181850 2545 ntTSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Naa50-204ENSMUST00000161326 4487 ntAPPRIS ALT1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Zfp683-201ENSMUST00000105884 1471 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Sox1P53783 Cpq-201ENSMUST00000042167 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Irx4-202ENSMUST00000176684 2384 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Sox1P53783 Serinc2-203ENSMUST00000122374 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Puf60-201ENSMUST00000002599 1821 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Dcdc2c-206ENSMUST00000221349 2209 ntAPPRIS P1 TSL 5 BASIC15.27■□□□□ 0.04
Sox1P53783 Cask-203ENSMUST00000115436 8260 ntAPPRIS P1 TSL 2 BASIC15.27■□□□□ 0.04
Sox1P53783 Gbx1-201ENSMUST00000088311 3475 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Gm14660-201ENSMUST00000119809 575 ntBASIC15.27■□□□□ 0.04
Sox1P53783 Sec22b-203ENSMUST00000130620 640 ntTSL 2 BASIC15.27■□□□□ 0.04
Sox1P53783 1700113H08Rik-202ENSMUST00000189456 974 ntTSL 5 BASIC15.27■□□□□ 0.04
Sox1P53783 Gm19220-201ENSMUST00000222682 803 ntBASIC15.27■□□□□ 0.04
Sox1P53783 Polr2e-201ENSMUST00000004786 1148 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Prss48-201ENSMUST00000061343 949 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.04
Sox1P53783 Nptx2-201ENSMUST00000071782 2536 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Parg-201ENSMUST00000022470 4413 ntAPPRIS P2 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Tmx1-201ENSMUST00000021471 2795 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Hoxc9-201ENSMUST00000001706 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC15.27■□□□□ 0.03
Sox1P53783 Majin-202ENSMUST00000113528 1562 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC15.27■□□□□ 0.03
Sox1P53783 Klhl5-204ENSMUST00000204097 3149 ntTSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Rps6kb2-201ENSMUST00000025749 1864 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Sox1P53783 Zic5-201ENSMUST00000039118 4767 ntAPPRIS P1 TSL 1 (best) BASIC15.27■□□□□ 0.03
Retrieved 100 of 76,532 protein–RNA pairs in 24.3 ms