Protein–RNA interactions for Protein: P50431

Shmt1, Serine hydroxymethyltransferase, cytosolic, mousemouse

Predictions only

Length 478 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Shmt1P50431 Haghl-211ENSMUST00000150324 1267 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Gm29202-201ENSMUST00000191263 422 ntTSL 5 BASIC15.89■□□□□ 0.13
Shmt1P50431 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Shmt1P50431 Atp6v0b-201ENSMUST00000036380 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Snx1-201ENSMUST00000034946 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC15.89■□□□□ 0.13
Shmt1P50431 Dnajc2-203ENSMUST00000115193 2416 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC15.89■□□□□ 0.13
Shmt1P50431 Tnip2-202ENSMUST00000087737 1987 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Zfp444-201ENSMUST00000054680 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Apol8-201ENSMUST00000070911 1838 ntAPPRIS P2 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
Shmt1P50431 Rasgrp1-207ENSMUST00000178884 5104 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Pdia3-201ENSMUST00000028683 2770 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Slc25a22-201ENSMUST00000019226 2811 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Sgsm2-201ENSMUST00000057631 4743 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Cystm1-205ENSMUST00000152804 445 ntAPPRIS P2 TSL 3 BASIC15.88■□□□□ 0.13
Shmt1P50431 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC15.88■□□□□ 0.13
Shmt1P50431 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.88■□□□□ 0.13
Shmt1P50431 Gm45612-201ENSMUST00000211320 160 ntBASIC15.88■□□□□ 0.13
Shmt1P50431 Mt3-201ENSMUST00000034211 536 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Olfr520-201ENSMUST00000098264 951 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
Shmt1P50431 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Nsmaf-201ENSMUST00000029910 3507 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Cdca7l-201ENSMUST00000021592 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Pigb-207ENSMUST00000184389 2079 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Ager-209ENSMUST00000174496 1347 ntAPPRIS ALT2 TSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 9430015G10Rik-208ENSMUST00000169550 2660 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
Shmt1P50431 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Zfp384-208ENSMUST00000112428 3132 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
Shmt1P50431 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Zbtb4-201ENSMUST00000108638 2552 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Dynlt1c-201ENSMUST00000092966 2589 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC15.87■□□□□ 0.13
Shmt1P50431 Adamts19-201ENSMUST00000052907 4666 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Clcn3-203ENSMUST00000093490 5518 ntAPPRIS ALT1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Trim63-201ENSMUST00000030638 1855 ntAPPRIS ALT2 TSL 5 BASIC15.87■□□□□ 0.13
Shmt1P50431 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Fyn-201ENSMUST00000063091 3562 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Tmem253-201ENSMUST00000100638 1234 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Taf3-202ENSMUST00000114906 583 ntTSL 2 BASIC15.87■□□□□ 0.13
Shmt1P50431 Gm11025-201ENSMUST00000140773 466 ntBASIC15.87■□□□□ 0.13
Shmt1P50431 2310061I04Rik-204ENSMUST00000148721 1293 ntAPPRIS P1 TSL 5 BASIC15.87■□□□□ 0.13
Shmt1P50431 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC15.87■□□□□ 0.13
Shmt1P50431 Olfr370-201ENSMUST00000058609 1096 ntAPPRIS P1 BASIC15.87■□□□□ 0.13
Shmt1P50431 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.87■□□□□ 0.13
Shmt1P50431 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC15.87■□□□□ 0.13
Shmt1P50431 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Galnt13-203ENSMUST00000112635 7531 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 Hr-201ENSMUST00000022691 5487 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
Shmt1P50431 CT010478.1-201ENSMUST00000220747 2787 ntBASIC15.87■□□□□ 0.13
Shmt1P50431 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Htr7-202ENSMUST00000164639 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Rnf181-201ENSMUST00000069580 1434 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Jade2-201ENSMUST00000020655 6273 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Tpm3-202ENSMUST00000118566 2190 ntTSL 5 BASIC15.86■□□□□ 0.13
Shmt1P50431 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Vwa8-202ENSMUST00000227255 3406 ntAPPRIS ALT2 BASIC15.86■□□□□ 0.13
Shmt1P50431 Lrr1-201ENSMUST00000110621 1500 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Dpm3-202ENSMUST00000107462 827 ntAPPRIS P1 TSL 3 BASIC15.86■□□□□ 0.13
Shmt1P50431 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Pfn2-203ENSMUST00000120289 905 ntTSL 2 BASIC15.86■□□□□ 0.13
Shmt1P50431 Ms4a6d-202ENSMUST00000125291 679 ntTSL 3 BASIC15.86■□□□□ 0.13
Shmt1P50431 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Thap4-205ENSMUST00000189728 713 ntTSL 2 BASIC15.86■□□□□ 0.13
Shmt1P50431 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Gm29340-201ENSMUST00000188763 3854 ntBASIC15.86■□□□□ 0.13
Shmt1P50431 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Skor1-201ENSMUST00000055281 3657 ntAPPRIS P3 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC15.86■□□□□ 0.13
Shmt1P50431 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Shmt1P50431 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC15.86■□□□□ 0.13
Shmt1P50431 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC15.86■□□□□ 0.13
Shmt1P50431 Tcf25-205ENSMUST00000212470 2572 ntTSL 1 (best) BASIC15.85■□□□□ 0.13
Retrieved 100 of 76,532 protein–RNA pairs in 21.3 ms