Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 P3h2-201ENSMUST00000039990 3283 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC12.38□□□□□ -0.43
Sdc1P18828 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Ppp1r15a-202ENSMUST00000167273 2809 ntAPPRIS P1 TSL 2 BASIC12.38□□□□□ -0.43
Sdc1P18828 Ltbp4-201ENSMUST00000038618 5386 ntAPPRIS P3 TSL 1 (best) BASIC12.38□□□□□ -0.43
Sdc1P18828 Dlgap3-201ENSMUST00000046659 3884 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 AU040320-202ENSMUST00000102607 4191 ntAPPRIS P4 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Slc25a37-201ENSMUST00000037064 4174 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Sept12-201ENSMUST00000170323 2576 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC12.37□□□□□ -0.43
Sdc1P18828 Ubxn4-201ENSMUST00000027592 4113 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Sf3b4-201ENSMUST00000076372 1915 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Ift52-201ENSMUST00000018002 2248 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Hmx2-201ENSMUST00000051997 3102 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Zfp133-ps-202ENSMUST00000124788 1079 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Tmem234-215ENSMUST00000173758 453 ntTSL 2 BASIC12.37□□□□□ -0.43
Sdc1P18828 Mir6404-201ENSMUST00000183699 94 ntBASIC12.37□□□□□ -0.43
Sdc1P18828 Pdxk-ps-203ENSMUST00000183934 680 ntTSL 3 BASIC12.37□□□□□ -0.43
Sdc1P18828 Rgcc-201ENSMUST00000022595 918 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Tagap1-201ENSMUST00000063683 2358 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Abtb2-201ENSMUST00000076212 4558 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Ylpm1-201ENSMUST00000021670 7003 ntAPPRIS P2 TSL 5 BASIC12.37□□□□□ -0.43
Sdc1P18828 Vamp2-201ENSMUST00000021273 2205 ntAPPRIS P1 TSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Cyp4x1os-201ENSMUST00000153951 2003 ntTSL 1 (best) BASIC12.37□□□□□ -0.43
Sdc1P18828 Zfp467-205ENSMUST00000114560 3266 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Zfp36l1-201ENSMUST00000021552 2990 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Snph-201ENSMUST00000028951 4730 ntAPPRIS P3 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Cdh7-206ENSMUST00000137092 2681 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Lipe-202ENSMUST00000054301 2661 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Btbd10-201ENSMUST00000047091 2581 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 9330162012Rik-201ENSMUST00000154919 3836 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Lrrc14-210ENSMUST00000155735 2286 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Sdc1P18828 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC12.36□□□□□ -0.43
Sdc1P18828 Sh3glb1-201ENSMUST00000163279 3961 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 AI480526-202ENSMUST00000159637 1697 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 H2-K1-205ENSMUST00000172912 1570 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Nop9-201ENSMUST00000019441 3694 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Gemin5-205ENSMUST00000172035 6213 ntAPPRIS ALT2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Tpgs1-201ENSMUST00000020552 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC12.36□□□□□ -0.43
Sdc1P18828 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Zdhhc6-209ENSMUST00000225495 1711 ntBASIC12.36□□□□□ -0.43
Sdc1P18828 Zfp566-201ENSMUST00000088785 1709 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Ccbe1-202ENSMUST00000130300 1631 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 March8-213ENSMUST00000203193 4245 ntTSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Gtf2h1-201ENSMUST00000006774 2736 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Ttc3-201ENSMUST00000117648 7417 ntAPPRIS P1 TSL 5 BASIC12.36□□□□□ -0.43
Sdc1P18828 Etnk2-201ENSMUST00000129213 2074 ntAPPRIS ALT2 TSL 2 BASIC12.36□□□□□ -0.43
Sdc1P18828 Mroh1-202ENSMUST00000096385 5268 ntAPPRIS P4 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC12.36□□□□□ -0.43
Sdc1P18828 Zfpm2-201ENSMUST00000053467 4974 ntAPPRIS P1 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Prickle3-201ENSMUST00000033485 2301 ntAPPRIS P2 TSL 1 (best) BASIC12.36□□□□□ -0.43
Sdc1P18828 Cdsn-201ENSMUST00000044804 2678 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Gm9947-201ENSMUST00000067599 2920 ntBASIC12.35□□□□□ -0.43
Sdc1P18828 Tnpo2-201ENSMUST00000093360 4863 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Ptpn11-202ENSMUST00000100770 5599 ntAPPRIS ALT1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Ccnf-201ENSMUST00000115390 3099 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Opa3-202ENSMUST00000161711 1390 ntAPPRIS ALT2 TSL 2 BASIC12.35□□□□□ -0.43
Sdc1P18828 Mir124-2hg-202ENSMUST00000186746 1368 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Rab34-201ENSMUST00000002128 1368 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Ssu72-202ENSMUST00000105595 874 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 E130218I03Rik-201ENSMUST00000122952 943 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Gm26571-201ENSMUST00000181399 666 ntBASIC12.35□□□□□ -0.43
Sdc1P18828 Gm28402-201ENSMUST00000188574 373 ntTSL 3 BASIC12.35□□□□□ -0.43
Sdc1P18828 AC175538.2-202ENSMUST00000224997 1057 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Sdc1P18828 1700018M17Rik-201ENSMUST00000052502 456 ntBASIC12.35□□□□□ -0.43
Sdc1P18828 Ube2s-201ENSMUST00000079496 1238 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Rtl8b-201ENSMUST00000088778 1232 ntAPPRIS P1 BASIC12.35□□□□□ -0.43
Sdc1P18828 Rasd1-201ENSMUST00000062405 1611 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 4930402H24Rik-202ENSMUST00000110243 1984 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Arhgap33-203ENSMUST00000207858 4337 ntAPPRIS ALT2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Lgi3-201ENSMUST00000047331 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Pear1-205ENSMUST00000172621 4490 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 N4bp3-201ENSMUST00000001080 2367 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Grid2ip-202ENSMUST00000110733 3825 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Yes1-201ENSMUST00000072311 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Adat1-203ENSMUST00000139820 2762 ntTSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Ralgapb-203ENSMUST00000109486 8383 ntAPPRIS P2 TSL 1 (best) BASIC12.35□□□□□ -0.43
Sdc1P18828 Iffo1-201ENSMUST00000117675 2833 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Alox5-201ENSMUST00000026795 2821 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Dhx9-202ENSMUST00000186380 4561 ntAPPRIS P2 TSL 2 BASIC12.34□□□□□ -0.43
Sdc1P18828 Gm42688-201ENSMUST00000101253 3628 ntAPPRIS P1 TSL 5 BASIC12.34□□□□□ -0.43
Sdc1P18828 Gm7008-201ENSMUST00000038121 1366 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Pik3cd-214ENSMUST00000177654 4765 ntAPPRIS P4 TSL 5 BASIC12.34□□□□□ -0.43
Sdc1P18828 Klhl18-203ENSMUST00000198164 4538 ntTSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Gm43056-201ENSMUST00000197865 2791 ntBASIC12.34□□□□□ -0.43
Sdc1P18828 Slc16a13-201ENSMUST00000060010 2531 ntAPPRIS P1 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 1700012B07Rik-202ENSMUST00000106674 2035 ntAPPRIS P4 TSL 1 (best) BASIC12.34□□□□□ -0.43
Sdc1P18828 Gm43570-201ENSMUST00000199951 3688 ntBASIC12.34□□□□□ -0.43
Sdc1P18828 Rims1-201ENSMUST00000081544 5954 ntAPPRIS ALT2 TSL 5 BASIC12.34□□□□□ -0.43
Retrieved 100 of 76,532 protein–RNA pairs in 51.7 ms