Protein–RNA interactions for Protein: O35627

Nr1i3, Nuclear receptor subfamily 1 group I member 3, mousemouse

Predictions only

Length 358 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nr1i3O35627 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Pcdha5-201ENSMUST00000192168 5206 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Tmem201-201ENSMUST00000054459 4631 ntAPPRIS ALT2 TSL 2 BASIC16.17■□□□□ 0.18
Nr1i3O35627 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC16.17■□□□□ 0.18
Nr1i3O35627 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC16.17■□□□□ 0.18
Nr1i3O35627 Dusp13-208ENSMUST00000183698 1019 ntTSL 5 BASIC16.17■□□□□ 0.18
Nr1i3O35627 Gm43347-201ENSMUST00000200226 580 ntBASIC16.17■□□□□ 0.18
Nr1i3O35627 Kcnk16-201ENSMUST00000024155 916 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
Nr1i3O35627 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 AI661453-201ENSMUST00000037701 1410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Cdcp1-201ENSMUST00000039229 5310 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Rad51-201ENSMUST00000028795 3368 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
Nr1i3O35627 Tchp-201ENSMUST00000094441 2882 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Slc39a13-202ENSMUST00000079976 1884 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Ap4b1-204ENSMUST00000106824 2412 ntTSL 5 BASIC16.16■□□□□ 0.18
Nr1i3O35627 Gm37305-201ENSMUST00000195714 4279 ntBASIC16.16■□□□□ 0.18
Nr1i3O35627 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Rbbp9-201ENSMUST00000028915 2170 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Lsr-202ENSMUST00000098553 1930 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Gm11467-201ENSMUST00000129407 674 ntTSL 3 BASIC16.16■□□□□ 0.18
Nr1i3O35627 Platr15-201ENSMUST00000147128 768 ntTSL 5 BASIC16.16■□□□□ 0.18
Nr1i3O35627 AC130671.1-201ENSMUST00000227384 1237 ntBASIC16.16■□□□□ 0.18
Nr1i3O35627 Gnptg-201ENSMUST00000038973 1234 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC16.16■□□□□ 0.18
Nr1i3O35627 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC16.16■□□□□ 0.18
Nr1i3O35627 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC16.16■□□□□ 0.18
Nr1i3O35627 Ndufab1-203ENSMUST00000123296 1416 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Dsg2-201ENSMUST00000059787 5766 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 H2-T23-201ENSMUST00000102678 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
Nr1i3O35627 Fbxl5-207ENSMUST00000124610 2306 ntTSL 5 BASIC16.16■□□□□ 0.18
Nr1i3O35627 Magi1-201ENSMUST00000055224 7007 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 D17Wsu92e-202ENSMUST00000114859 3522 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Mapk8ip3-207ENSMUST00000121723 5410 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Gm18856-201ENSMUST00000178096 1374 ntBASIC16.15■□□□□ 0.18
Nr1i3O35627 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Micall2-201ENSMUST00000044642 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Gpr142-202ENSMUST00000106584 1116 ntAPPRIS ALT2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Smco4-202ENSMUST00000178999 820 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Gtf3c2-202ENSMUST00000200871 318 ntTSL 3 BASIC16.15■□□□□ 0.18
Nr1i3O35627 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC16.15■□□□□ 0.18
Nr1i3O35627 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Gm7787-201ENSMUST00000216858 688 ntBASIC16.15■□□□□ 0.18
Nr1i3O35627 Cdc37l1-204ENSMUST00000224511 2944 ntAPPRIS ALT2 BASIC16.15■□□□□ 0.18
Nr1i3O35627 AC147366.1-201ENSMUST00000227671 852 ntBASIC16.15■□□□□ 0.18
Nr1i3O35627 Gpr142-201ENSMUST00000045319 1098 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Smco4-201ENSMUST00000045620 954 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Syvn1-203ENSMUST00000134667 3159 ntAPPRIS P2 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Stap2-201ENSMUST00000043785 1491 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Vcan-205ENSMUST00000159337 2273 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Ddx20-201ENSMUST00000090680 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
Nr1i3O35627 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.18
Nr1i3O35627 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Asic1-201ENSMUST00000023758 4114 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Tfpt-202ENSMUST00000108641 1166 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 5430427M07Rik-202ENSMUST00000221524 1023 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 CT010506.4-201ENSMUST00000225457 351 ntBASIC16.14■□□□□ 0.17
Nr1i3O35627 Calm2-201ENSMUST00000040440 1205 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Rps4l-201ENSMUST00000071745 943 ntBASIC16.14■□□□□ 0.17
Nr1i3O35627 Ceacam16-201ENSMUST00000014830 1635 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.14■□□□□ 0.17
Nr1i3O35627 Dse-201ENSMUST00000048010 4389 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Chuk-201ENSMUST00000026217 3502 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Tmpo-202ENSMUST00000072239 3533 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Gm37912-201ENSMUST00000191895 3076 ntBASIC16.14■□□□□ 0.17
Nr1i3O35627 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Ush1c-202ENSMUST00000078680 2047 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Carlr-201ENSMUST00000181515 2574 ntBASIC16.14■□□□□ 0.17
Nr1i3O35627 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
Nr1i3O35627 Trp53-206ENSMUST00000171247 1867 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Ccer1-201ENSMUST00000060703 1865 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
Nr1i3O35627 Dnm1l-201ENSMUST00000023477 4017 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Fam131a-201ENSMUST00000056518 2432 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 Mpp3-201ENSMUST00000062801 2848 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
Nr1i3O35627 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Nr1i3O35627 Tmod2-208ENSMUST00000215614 1921 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Nr1i3O35627 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
Nr1i3O35627 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
Nr1i3O35627 Ggn-205ENSMUST00000209019 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC16.13■□□□□ 0.17
Retrieved 100 of 76,532 protein–RNA pairs in 38 ms