Protein–RNA interactions for Protein: Q9ER60

Scn4a, Sodium channel protein type 4 subunit alpha, mousemouse

Predictions only

Length 1,841 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scn4aQ9ER60 Irx5-201ENSMUST00000034184 2450 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm26858-201ENSMUST00000180608 2040 ntTSL 5 BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm17705-201ENSMUST00000172285 1555 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Pick1-202ENSMUST00000053926 2415 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm13216-201ENSMUST00000117145 591 ntBASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm12384-201ENSMUST00000119228 919 ntBASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm11524-201ENSMUST00000119349 807 ntBASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm27341-201ENSMUST00000183570 106 ntBASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gm19078-201ENSMUST00000206311 727 ntBASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Pfkfb4-203ENSMUST00000198140 3488 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
Scn4aQ9ER60 Psmb9-204ENSMUST00000174576 1351 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Cep83-201ENSMUST00000020212 3639 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Gm43289-201ENSMUST00000200537 1475 ntBASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Rbm8a2-201ENSMUST00000104983 1338 ntAPPRIS P1 BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Wbp2nl-201ENSMUST00000023089 1318 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Trim33-201ENSMUST00000029444 8875 ntAPPRIS P4 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Pole3-201ENSMUST00000030091 1805 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Sgce-205ENSMUST00000115579 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Crybb2-202ENSMUST00000112336 906 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Neurl3-202ENSMUST00000188666 1206 ntTSL 5 BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 AC133598.1-201ENSMUST00000224327 660 ntBASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Cryge-201ENSMUST00000087359 631 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Zfp622-201ENSMUST00000061875 2802 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Rab37-202ENSMUST00000067754 2577 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
Scn4aQ9ER60 Wwc1-201ENSMUST00000018993 4531 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Lmtk3-202ENSMUST00000120005 4997 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Fkrp-201ENSMUST00000061390 2827 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Spatc1l-202ENSMUST00000105414 1060 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Gm13442-201ENSMUST00000135749 663 ntTSL 3 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Gm9445-201ENSMUST00000207454 1285 ntBASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Pdlim3-203ENSMUST00000210422 1479 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Slc35a1-201ENSMUST00000029970 2039 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Zfp384-202ENSMUST00000054553 2451 ntTSL 5 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Fbxo24-202ENSMUST00000111002 2306 ntTSL 5 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Ldb3-208ENSMUST00000228044 1883 ntAPPRIS ALT2 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Hsd3b3-203ENSMUST00000107018 1443 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Klhdc4-201ENSMUST00000045884 2078 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Sun1-203ENSMUST00000100517 1522 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Mydgf-201ENSMUST00000019723 1710 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Pias4-201ENSMUST00000005064 2571 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Gm16315-201ENSMUST00000163009 783 ntTSL 3 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 1700065I16Rik-202ENSMUST00000185477 813 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Olfr284-202ENSMUST00000206647 966 ntBASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Gm6983-201ENSMUST00000214912 628 ntBASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Timm9-203ENSMUST00000220482 859 ntAPPRIS P1 TSL 3 BASIC20.23■□□□□ 0.83
Scn4aQ9ER60 Amdhd1-201ENSMUST00000016034 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Slc30a5-205ENSMUST00000225922 2722 ntAPPRIS ALT2 BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Hoxb4-201ENSMUST00000049241 2566 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Gm44207-201ENSMUST00000204568 1424 ntBASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Men1-201ENSMUST00000056391 2975 ntAPPRIS P2 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Cacfd1-205ENSMUST00000114007 2689 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 AC113441.2-201ENSMUST00000221538 1468 ntBASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Hexim2-202ENSMUST00000107037 1221 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Fam110a-202ENSMUST00000109863 1284 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 C030047K22Rik-201ENSMUST00000150382 1164 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Gm22331-201ENSMUST00000158066 136 ntBASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Gm11214-201ENSMUST00000184252 552 ntAPPRIS P1 BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Gm5363-201ENSMUST00000211927 938 ntBASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 BC049730-201ENSMUST00000051714 1172 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Cma2-201ENSMUST00000089555 947 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Cacng4-201ENSMUST00000021066 3500 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Rmnd5b-201ENSMUST00000001081 1946 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Gm26880-201ENSMUST00000181610 1318 ntTSL 5 BASIC20.22■□□□□ 0.83
Scn4aQ9ER60 Comp-201ENSMUST00000003659 2416 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Gm22902-201ENSMUST00000158488 302 ntBASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Gm45339-201ENSMUST00000210823 877 ntTSL 5 BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Ntan1-201ENSMUST00000023362 1175 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Tsc22d4-201ENSMUST00000031738 1043 ntTSL 3 BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Krtap6-5-201ENSMUST00000074637 600 ntAPPRIS P1 BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Eml2-201ENSMUST00000048502 2275 ntAPPRIS P3 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 0610037L13Rik-207ENSMUST00000125107 1551 ntTSL 1 (best) BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Arhgap23-202ENSMUST00000107601 5450 ntTSL 5 BASIC20.21■□□□□ 0.83
Scn4aQ9ER60 Nfe2l2-201ENSMUST00000102672 2475 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.83
Scn4aQ9ER60 1700012C08Rik-201ENSMUST00000141554 363 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Gm26464-201ENSMUST00000157094 305 ntBASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Gm7593-201ENSMUST00000187246 644 ntBASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Gm7895-201ENSMUST00000187459 1173 ntBASIC20.2■□□□□ 0.82
Scn4aQ9ER60 AC192088.1-201ENSMUST00000227561 301 ntBASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Fbxo44-205ENSMUST00000151127 1403 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Mfsd4b5-205ENSMUST00000170579 1554 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Wsb2-ps-201ENSMUST00000117937 1217 ntBASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Gm12843-201ENSMUST00000137607 601 ntTSL 3 BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Ighv1-25-201ENSMUST00000195638 345 ntBASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Plppr2-203ENSMUST00000190387 2608 ntAPPRIS P2 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Cyp4f16-201ENSMUST00000003416 2227 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Prss47-204ENSMUST00000222769 1406 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Eefsec-201ENSMUST00000165242 2679 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
Scn4aQ9ER60 Tbrg4-212ENSMUST00000189268 2347 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Pcna-201ENSMUST00000028817 1518 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Ube2d-ps-205ENSMUST00000142942 1840 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
Scn4aQ9ER60 Znrf1-205ENSMUST00000172856 4600 ntAPPRIS P1 TSL 5 BASIC20.19■□□□□ 0.82
Retrieved 100 of 76,532 protein–RNA pairs in 32.2 ms