Protein–RNA interactions for Protein: Q9CWT6

Ddx28, Probable ATP-dependent RNA helicase DDX28, mousemouse

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddx28Q9CWT6 Slc16a9-201ENSMUST00000046807 3756 ntAPPRIS P1 TSL 1 (best) BASIC14.16□□□□□ -0.14
Ddx28Q9CWT6 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Cope-201ENSMUST00000066469 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Ubp1-206ENSMUST00000216558 1623 ntAPPRIS P4 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Tc2n-203ENSMUST00000160830 2005 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Grin3a-202ENSMUST00000093859 7491 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Ckb-201ENSMUST00000001304 1472 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Nap1l1-201ENSMUST00000065917 1486 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Bpifa3-202ENSMUST00000109746 1102 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Irak1-206ENSMUST00000114354 3835 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Chchd2-ps-201ENSMUST00000117487 462 ntBASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Ifi27l2b-201ENSMUST00000044687 1093 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Plch2-201ENSMUST00000105631 5053 ntAPPRIS ALT2 TSL 5 BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Prkcb-202ENSMUST00000064989 2911 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Ulk1-211ENSMUST00000200299 3581 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Vill-207ENSMUST00000141185 1645 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Asb2-201ENSMUST00000021617 2690 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Kcnma1-214ENSMUST00000190044 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Rab9-202ENSMUST00000112091 1447 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Ccdc69-201ENSMUST00000055040 1402 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
Ddx28Q9CWT6 Erich6-201ENSMUST00000041115 2195 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Ddx28Q9CWT6 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC14.15□□□□□ -0.15
Ddx28Q9CWT6 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Prkg1-202ENSMUST00000073581 2841 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 B020017C02Rik-201ENSMUST00000197444 1688 ntBASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Usp19-201ENSMUST00000006854 4791 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Zfp574-202ENSMUST00000179556 4140 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Gm26718-201ENSMUST00000181048 1378 ntTSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Cldn7-203ENSMUST00000108596 664 ntTSL 3 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Zkscan8-202ENSMUST00000110481 728 ntTSL 2 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Gm15372-201ENSMUST00000120729 834 ntBASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Gm9172-201ENSMUST00000212092 954 ntBASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Gm45890-204ENSMUST00000212356 545 ntTSL 2 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Serf2-201ENSMUST00000099475 525 ntTSL 2 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Cacna1g-207ENSMUST00000107789 8383 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Slc25a11-201ENSMUST00000014750 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Pcdhga12-201ENSMUST00000044851 5080 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Foxred2-201ENSMUST00000016696 4793 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Ddc-202ENSMUST00000109659 1954 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Gm10501-201ENSMUST00000151136 2200 ntTSL 2 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Parp10-202ENSMUST00000165738 3367 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Plch2-207ENSMUST00000139976 5322 ntAPPRIS P3 TSL 1 (best) BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Pde4d-208ENSMUST00000120671 2455 ntTSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Cacna1g-203ENSMUST00000103166 8104 ntAPPRIS ALT2 TSL 5 BASIC14.14□□□□□ -0.15
Ddx28Q9CWT6 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Eif4ebp2-201ENSMUST00000020288 5784 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Khdc1c-201ENSMUST00000070223 1946 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Rabggta-205ENSMUST00000227061 2882 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Prr23a3-201ENSMUST00000167951 1817 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Nfkb1-206ENSMUST00000164430 3007 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Cnot10-206ENSMUST00000216785 1723 ntTSL 5 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Yipf5-201ENSMUST00000025364 2329 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Pccb-201ENSMUST00000035116 2320 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Zfp219-201ENSMUST00000067549 2933 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Pcdh7-203ENSMUST00000191837 8785 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 1810010H24Rik-201ENSMUST00000106767 1100 ntAPPRIS P2 TSL 2 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Gm15165-201ENSMUST00000118140 502 ntBASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Gm16295-201ENSMUST00000139512 643 ntTSL 3 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Mgarp-203ENSMUST00000141156 1246 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Gm18669-201ENSMUST00000216049 778 ntBASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Nudt14-203ENSMUST00000221497 355 ntTSL 2 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Nfe2l1-204ENSMUST00000107659 2351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 AC122901.1-201ENSMUST00000214203 1790 ntBASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Ankrd23-202ENSMUST00000193083 2277 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Islr2-201ENSMUST00000114144 3880 ntAPPRIS P3 TSL 2 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 App-207ENSMUST00000227737 2827 ntBASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Pdlim1-201ENSMUST00000068439 2571 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Plscr3-202ENSMUST00000108632 1835 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Zfp839-201ENSMUST00000170060 3723 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Cep164-204ENSMUST00000213154 6105 ntAPPRIS ALT2 TSL 5 BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Arsi-201ENSMUST00000040359 2975 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Acot6-201ENSMUST00000056822 3388 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
Ddx28Q9CWT6 Hcn3-201ENSMUST00000029686 4002 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
Ddx28Q9CWT6 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.12□□□□□ -0.15
Retrieved 100 of 76,532 protein–RNA pairs in 52.1 ms