Protein–RNA interactions for Protein: Q99LC2

Cstf1, Cleavage stimulation factor subunit 1, mousemouse

Known RBP Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cstf1Q99LC2 Ube2r2-201ENSMUST00000040008 3600 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Apoa5-202ENSMUST00000121598 2515 ntAPPRIS P1 TSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Chst8-204ENSMUST00000205259 1980 ntAPPRIS P1 TSL 5 BASIC15.07■□□□□ 0
Cstf1Q99LC2 Cspp1-203ENSMUST00000118263 2162 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Ankra2-204ENSMUST00000150352 2217 ntTSL 1 (best) BASIC15.07■□□□□ 0
Cstf1Q99LC2 Rab34-203ENSMUST00000108322 1685 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Cend1-202ENSMUST00000124444 1733 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Smtn-201ENSMUST00000020718 1747 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Nid1-201ENSMUST00000005532 6091 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Disc1-201ENSMUST00000074562 2597 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Disc1-203ENSMUST00000098311 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Gm5096-201ENSMUST00000091776 1858 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Zswim1-201ENSMUST00000017908 2705 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Fbxl18-201ENSMUST00000035985 2831 ntAPPRIS P2 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Phf7-201ENSMUST00000022459 2084 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Smad1-203ENSMUST00000109885 3775 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Gfpt1-202ENSMUST00000113655 1255 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Gm2810-201ENSMUST00000118681 990 ntBASIC15.06■□□□□ 0
Cstf1Q99LC2 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Gm10499-201ENSMUST00000174094 934 ntBASIC15.06■□□□□ 0
Cstf1Q99LC2 Cyba-201ENSMUST00000017604 744 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Gm8318-201ENSMUST00000182954 872 ntBASIC15.06■□□□□ 0
Cstf1Q99LC2 Mpv17-207ENSMUST00000201491 923 ntTSL 2 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Gm44855-201ENSMUST00000205725 362 ntBASIC15.06■□□□□ 0
Cstf1Q99LC2 AC132467.2-202ENSMUST00000227726 559 ntBASIC15.06■□□□□ 0
Cstf1Q99LC2 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Psmd8-202ENSMUST00000182328 1391 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Ints10-203ENSMUST00000110241 2322 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Golga5-201ENSMUST00000021609 3390 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Inhba-202ENSMUST00000164993 1529 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 9230020A06Rik-203ENSMUST00000214621 1682 ntTSL 5 BASIC15.06■□□□□ 0
Cstf1Q99LC2 AC130669.1-201ENSMUST00000228537 1672 ntBASIC15.06■□□□□ 0
Cstf1Q99LC2 Rflna-201ENSMUST00000036109 1681 ntAPPRIS P1 TSL 5 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Shank1-202ENSMUST00000107935 6649 ntAPPRIS ALT2 TSL 5 BASIC15.06■□□□□ 0
Cstf1Q99LC2 Bend5-201ENSMUST00000030274 1826 ntAPPRIS P1 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Tulp2-205ENSMUST00000107762 1883 ntAPPRIS ALT2 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Taz-201ENSMUST00000069722 1851 ntAPPRIS P3 TSL 1 (best) BASIC15.06■□□□□ 0
Cstf1Q99LC2 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cstf1Q99LC2 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC15.05■□□□□ 0
Cstf1Q99LC2 Lhx3-202ENSMUST00000054099 2184 ntTSL 1 (best) BASIC15.05■□□□□ 0
Cstf1Q99LC2 Fam178b-202ENSMUST00000170295 2286 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Cstf1Q99LC2 Cygb-201ENSMUST00000021166 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ 0
Cstf1Q99LC2 Dmtn-201ENSMUST00000022694 5418 ntAPPRIS ALT1 TSL 5 BASIC15.05■□□□□ 0
Cstf1Q99LC2 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC15.05■□□□□ 0
Cstf1Q99LC2 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC15.05■□□□□ 0
Cstf1Q99LC2 Camta1-202ENSMUST00000097774 8533 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ 0
Cstf1Q99LC2 Phactr2-203ENSMUST00000105545 8556 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ 0
Cstf1Q99LC2 Camsap1-201ENSMUST00000091268 7978 ntAPPRIS ALT2 TSL 5 BASIC15.05■□□□□ -0
Cstf1Q99LC2 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 Dancr-202ENSMUST00000120364 575 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 Gm10142-201ENSMUST00000179767 363 ntAPPRIS P1 BASIC15.05■□□□□ -0
Cstf1Q99LC2 Fmc1-201ENSMUST00000019833 479 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 Gm9794-201ENSMUST00000202370 423 ntBASIC15.05■□□□□ -0
Cstf1Q99LC2 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC15.05■□□□□ -0
Cstf1Q99LC2 C2cd2-201ENSMUST00000170757 6555 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 4933426K07Rik-201ENSMUST00000143009 1548 ntTSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC15.05■□□□□ -0
Cstf1Q99LC2 H2-Q10-202ENSMUST00000174525 1991 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Cstf1Q99LC2 Zdhhc1-203ENSMUST00000212303 2056 ntAPPRIS P1 TSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 Mcoln2-202ENSMUST00000098524 2492 ntAPPRIS ALT2 TSL 1 (best) BASIC15.05■□□□□ -0
Cstf1Q99LC2 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC15.05■□□□□ -0
Cstf1Q99LC2 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Eif4h-201ENSMUST00000036125 2367 ntAPPRIS ALT1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Chrna4-202ENSMUST00000108851 2071 ntAPPRIS ALT2 TSL 5 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Nfat5-211ENSMUST00000151114 4982 ntAPPRIS P3 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Procr-201ENSMUST00000029140 1597 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Pttg1ip-205ENSMUST00000162429 652 ntAPPRIS ALT2 TSL 2 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Gm5914-202ENSMUST00000182863 375 ntTSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 0610005C13Rik-209ENSMUST00000211209 974 ntTSL 2 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Slc15a3-201ENSMUST00000025646 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Rffl-202ENSMUST00000071152 3633 ntTSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC15.04■□□□□ -0
Cstf1Q99LC2 Gm8189-202ENSMUST00000211035 2039 ntTSL 5 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Pdlim7-206ENSMUST00000131306 1915 ntTSL 2 BASIC15.04■□□□□ -0
Cstf1Q99LC2 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC15.03■□□□□ -0
Cstf1Q99LC2 Taf5l-202ENSMUST00000165628 2973 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cstf1Q99LC2 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC15.03■□□□□ -0
Cstf1Q99LC2 Pak4-202ENSMUST00000108283 2899 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cstf1Q99LC2 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cstf1Q99LC2 Specc1-210ENSMUST00000201723 2690 ntTSL 5 BASIC15.03■□□□□ -0
Cstf1Q99LC2 Cstf2-201ENSMUST00000033609 4502 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Cstf1Q99LC2 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC15.03■□□□□ -0
Retrieved 100 of 76,532 protein–RNA pairs in 56.8 ms