Protein–RNA interactions for Protein: Q8CFK2

Brf1, Transcription factor IIIB 90 kDa subunit, mousemouse

Predictions only

Length 676 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Brf1Q8CFK2 Slc7a15-202ENSMUST00000095863 1467 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Spon1-202ENSMUST00000084696 5201 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Gm13034-201ENSMUST00000121342 3177 ntBASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Msantd3-202ENSMUST00000064807 1378 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Sept8-202ENSMUST00000117061 4563 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Gm16425-201ENSMUST00000118143 3130 ntBASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Cyb5rl-204ENSMUST00000106760 840 ntTSL 3 BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Gm43767-201ENSMUST00000198933 381 ntBASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Pts-206ENSMUST00000214873 511 ntTSL 5 BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Zfp451-201ENSMUST00000019861 3958 ntAPPRIS P3 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Acsl3-201ENSMUST00000035779 3950 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Impdh1-207ENSMUST00000162099 2580 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Psmb10-201ENSMUST00000034369 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Galnt17-202ENSMUST00000160609 2875 ntTSL 5 BASIC18.2■□□□□ 0.5
Brf1Q8CFK2 Slc39a11-202ENSMUST00000071539 2664 ntAPPRIS P3 TSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Srsf11-204ENSMUST00000121326 3106 ntAPPRIS P4 TSL 5 BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Josd2-202ENSMUST00000117324 858 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 9130019P16Rik-201ENSMUST00000135612 1019 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Gm8909-203ENSMUST00000173353 1428 ntAPPRIS ALT2 TSL 5 BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 2010010A06Rik-203ENSMUST00000190465 650 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Meaf6-201ENSMUST00000055213 872 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Pmm1-202ENSMUST00000071462 1059 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Kif26a-201ENSMUST00000128402 6918 ntAPPRIS P1 TSL 1 (best) BASIC18.19■□□□□ 0.5
Brf1Q8CFK2 Asic4-201ENSMUST00000037708 2464 ntAPPRIS P2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Lsp1-203ENSMUST00000105966 1503 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Efs-202ENSMUST00000227037 2540 ntBASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Erlec1-201ENSMUST00000073192 2532 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Ubr2-202ENSMUST00000113337 7633 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Samd4-204ENSMUST00000125688 1773 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Dusp3-205ENSMUST00000143177 391 ntTSL 3 BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Col16a1-201ENSMUST00000044565 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Iqsec1-202ENSMUST00000101153 8036 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Fam78b-206ENSMUST00000190081 4666 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Rdx-201ENSMUST00000000590 4380 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
Brf1Q8CFK2 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Tmprss5-204ENSMUST00000167095 1146 ntAPPRIS ALT2 TSL 5 BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Ccer2-201ENSMUST00000178767 1054 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Ly6g6f-201ENSMUST00000038507 1141 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Kdm3a-201ENSMUST00000065509 4816 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Ptprs-211ENSMUST00000223859 5588 ntBASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Gnpda2-202ENSMUST00000120789 1594 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
Brf1Q8CFK2 Trip10-202ENSMUST00000224152 1812 ntAPPRIS ALT2 BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Ube2j1-202ENSMUST00000124992 3530 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Gm12008-201ENSMUST00000117791 755 ntBASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Ndufb7-201ENSMUST00000036996 623 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Senp1-204ENSMUST00000180657 3806 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Abcb4-201ENSMUST00000003717 4079 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
Brf1Q8CFK2 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Usp38-201ENSMUST00000042724 4707 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
Brf1Q8CFK2 Slmap-212ENSMUST00000139075 4508 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
Retrieved 100 of 76,532 protein–RNA pairs in 53.7 ms