Protein–RNA interactions for Protein: Q8BY87

Usp47, Ubiquitin carboxyl-terminal hydrolase 47, mousemouse

Predictions only

Length 1,376 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Usp47Q8BY87 Gm11505-201ENSMUST00000130442 737 ntTSL 3 BASIC21.22■□□□□ 0.99
Usp47Q8BY87 1700003M07Rik-202ENSMUST00000147634 564 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Gm20444-201ENSMUST00000174014 648 ntTSL 3 BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Gm4691-201ENSMUST00000182339 1000 ntBASIC21.22■□□□□ 0.99
Usp47Q8BY87 Gm2451-201ENSMUST00000199447 999 ntBASIC21.22■□□□□ 0.99
Usp47Q8BY87 Gm10290-201ENSMUST00000200451 999 ntBASIC21.22■□□□□ 0.99
Usp47Q8BY87 H2-K1-202ENSMUST00000087189 579 ntTSL 1 (best) BASIC21.22■□□□□ 0.99
Usp47Q8BY87 Usp36-201ENSMUST00000092382 5609 ntAPPRIS P1 TSL 5 BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Ccdc90b-201ENSMUST00000032842 1596 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Spryd4-201ENSMUST00000061995 1583 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 E2f2-201ENSMUST00000061721 4739 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Cacna2d2-203ENSMUST00000164988 5542 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Fbxo8-202ENSMUST00000110322 1709 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Cep104-201ENSMUST00000047497 5151 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Man2a1-201ENSMUST00000086723 6991 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Iqgap2-201ENSMUST00000068603 5771 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Acbd5-203ENSMUST00000114526 3725 ntAPPRIS P4 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Chd5-202ENSMUST00000030775 9486 ntAPPRIS P3 TSL 5 BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Nek9-201ENSMUST00000040992 5386 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Mink1-202ENSMUST00000072873 4610 ntAPPRIS ALT2 TSL 5 BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Rps10-ps2-201ENSMUST00000127484 496 ntBASIC21.21■□□□□ 0.99
Usp47Q8BY87 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Gm13034-201ENSMUST00000121342 3177 ntBASIC21.21■□□□□ 0.99
Usp47Q8BY87 Hsd17b4-201ENSMUST00000025385 2684 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Usp47Q8BY87 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Olah-201ENSMUST00000027955 1533 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Ptpre-207ENSMUST00000211140 5753 ntAPPRIS P3 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Zfp553-201ENSMUST00000056232 3043 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Dnajc25-201ENSMUST00000095070 4023 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Gm25948-201ENSMUST00000175334 112 ntBASIC21.2■□□□□ 0.98
Usp47Q8BY87 Gm40123-201ENSMUST00000198175 1027 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Smim4-202ENSMUST00000064032 791 ntTSL 3 BASIC21.2■□□□□ 0.98
Usp47Q8BY87 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Arhgef10l-201ENSMUST00000039204 4493 ntAPPRIS P4 TSL 1 (best) BASIC21.2■□□□□ 0.98
Usp47Q8BY87 Sirt5-211ENSMUST00000223194 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Cep135-202ENSMUST00000121979 5537 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Flvcr1-201ENSMUST00000085635 4040 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Plppr2-202ENSMUST00000188468 1480 ntAPPRIS ALT2 TSL 5 BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Catip-204ENSMUST00000191010 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Kcnq5-203ENSMUST00000115300 6975 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Romo1-203ENSMUST00000109598 362 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Gm11543-201ENSMUST00000120758 370 ntBASIC21.19■□□□□ 0.98
Usp47Q8BY87 AC155937.1-202ENSMUST00000156229 621 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Tmem33-206ENSMUST00000162543 664 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 4930593A02Rik-202ENSMUST00000203879 938 ntTSL 5 BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Caly-201ENSMUST00000026541 1220 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Vkorc1-201ENSMUST00000033074 748 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Errfi1-201ENSMUST00000030811 3043 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
Usp47Q8BY87 Fastk-203ENSMUST00000115043 3056 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Pi4k2a-201ENSMUST00000066778 3771 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Gm42934-201ENSMUST00000196920 1345 ntBASIC21.18■□□□□ 0.98
Usp47Q8BY87 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Coro1c-201ENSMUST00000004646 3491 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Shroom1-204ENSMUST00000109013 3312 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Rnf207-201ENSMUST00000076183 2466 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Pam-210ENSMUST00000161567 3630 ntAPPRIS ALT2 TSL 5 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Robo3-202ENSMUST00000115038 4797 ntAPPRIS P2 TSL 5 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Yes1-205ENSMUST00000202543 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Tnfrsf13b-202ENSMUST00000101103 750 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Plekhb1-202ENSMUST00000107043 931 ntTSL 2 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Cmc2-202ENSMUST00000128304 394 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Sumo3-204ENSMUST00000129492 487 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Platr13-201ENSMUST00000133945 375 ntTSL 5 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Mvk-206ENSMUST00000137167 1049 ntTSL 2 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Gm11682-201ENSMUST00000144689 516 ntTSL 3 BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Gm37171-201ENSMUST00000192636 1185 ntBASIC21.18■□□□□ 0.98
Usp47Q8BY87 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 P4ha2-202ENSMUST00000093107 2263 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Myog-201ENSMUST00000027730 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Igdcc3-203ENSMUST00000217371 3183 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Gata1-201ENSMUST00000033502 1902 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
Usp47Q8BY87 Mphosph8-201ENSMUST00000116468 2939 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp47Q8BY87 9530003J23Rik-202ENSMUST00000159193 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp47Q8BY87 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Usp47Q8BY87 Gm18737-201ENSMUST00000173594 937 ntBASIC21.17■□□□□ 0.98
Usp47Q8BY87 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC21.17■□□□□ 0.98
Usp47Q8BY87 4930573H18Rik-201ENSMUST00000197696 906 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp47Q8BY87 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
Usp47Q8BY87 Gpbar1-201ENSMUST00000077985 1075 ntAPPRIS P1 BASIC21.17■□□□□ 0.98
Usp47Q8BY87 Cgn-203ENSMUST00000153263 2210 ntTSL 2 BASIC21.17■□□□□ 0.98
Usp47Q8BY87 Steap2-202ENSMUST00000115424 3285 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
Retrieved 100 of 76,532 protein–RNA pairs in 11.7 ms