Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Pik3ap1-201ENSMUST00000059672 2615 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Dhx16-201ENSMUST00000025292 3351 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Itsn1-203ENSMUST00000095909 6103 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Gps1-208ENSMUST00000208737 1843 ntAPPRIS ALT1 TSL 5 BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Gm3373-202ENSMUST00000177556 1955 ntAPPRIS P5 TSL 5 BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Gm3500-201ENSMUST00000177986 1955 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Foxc2-201ENSMUST00000054691 2725 ntAPPRIS P1 BASIC17.77■□□□□ 0.43
Trim56Q80VI1 Ube2d3-210ENSMUST00000197539 2515 ntAPPRIS P2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Gm3252-201ENSMUST00000165619 1949 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Fhdc1-205ENSMUST00000194027 1648 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Sfn-201ENSMUST00000057311 1613 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Tex13a-201ENSMUST00000096314 1317 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Sptbn4-203ENSMUST00000108363 4724 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Sptbn4-204ENSMUST00000108364 4740 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Hist1h4n-201ENSMUST00000102979 430 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Gm45208-202ENSMUST00000208156 1153 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Gm45612-201ENSMUST00000211320 160 ntBASIC17.76■□□□□ 0.43
Trim56Q80VI1 Cfdp1-201ENSMUST00000034432 1178 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Neurl2-201ENSMUST00000042775 1014 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Gm10313-201ENSMUST00000095320 1002 ntBASIC17.76■□□□□ 0.43
Trim56Q80VI1 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Itgb4-205ENSMUST00000106461 6208 ntAPPRIS ALT2 TSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Slc39a14-201ENSMUST00000022688 2098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Mmp28-203ENSMUST00000108137 2451 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Chtf8-202ENSMUST00000175940 2890 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Uros-203ENSMUST00000106145 1644 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC17.76■□□□□ 0.43
Trim56Q80VI1 Itpripl1-201ENSMUST00000110386 1898 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Luc7l-203ENSMUST00000119928 1441 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Fam83h-202ENSMUST00000170153 4534 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Ntng2-203ENSMUST00000091153 1695 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Zswim4-201ENSMUST00000039480 4625 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Gm15593-201ENSMUST00000122085 1008 ntBASIC17.75■□□□□ 0.43
Trim56Q80VI1 Gm10244-202ENSMUST00000156905 474 ntTSL 3 BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Gm16026-204ENSMUST00000162652 683 ntBASIC17.75■□□□□ 0.43
Trim56Q80VI1 Gm15406-202ENSMUST00000202229 767 ntTSL 2 BASIC17.75■□□□□ 0.43
Trim56Q80VI1 AC124549.3-201ENSMUST00000225541 367 ntBASIC17.75■□□□□ 0.43
Trim56Q80VI1 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Cyp2d40-201ENSMUST00000055721 1161 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Nutf2-201ENSMUST00000008594 948 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 G0s2-201ENSMUST00000009777 871 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Dnm1l-203ENSMUST00000115749 4068 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Dnm1l-202ENSMUST00000096229 4056 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Pou2f3-202ENSMUST00000176636 2522 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Anapc2-201ENSMUST00000028341 3004 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Trappc10-201ENSMUST00000000384 5047 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Knl1-201ENSMUST00000028799 5527 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Foxi1-201ENSMUST00000060271 2357 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Gm26666-201ENSMUST00000180763 2461 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Dcp1b-201ENSMUST00000073909 1748 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Myo5b-201ENSMUST00000074157 6745 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Trim56Q80VI1 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Acap3-202ENSMUST00000105584 4365 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Jade2-202ENSMUST00000109090 6230 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Gm26675-201ENSMUST00000181068 1525 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Srpx-203ENSMUST00000115544 1865 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Il15ra-206ENSMUST00000114834 784 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Ftl1-ps1-202ENSMUST00000222435 938 ntAPPRIS P1 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Khk-201ENSMUST00000031053 1257 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Tnp2-201ENSMUST00000051297 549 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Ttll3-202ENSMUST00000038889 3114 ntAPPRIS ALT2 TSL 5 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Wt1-202ENSMUST00000111099 2441 ntTSL 5 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Xiap-203ENSMUST00000115094 6542 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Fbxw11-203ENSMUST00000109366 3821 ntAPPRIS ALT1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Rnf168-203ENSMUST00000171474 4460 ntAPPRIS P2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Trim56Q80VI1 Efs-202ENSMUST00000227037 2540 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Hectd3-201ENSMUST00000050067 4583 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Chrna4-201ENSMUST00000067120 4565 ntAPPRIS P2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 AC131743.5-201ENSMUST00000220775 1618 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Shisa7-201ENSMUST00000066041 6006 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Ppp1r8-201ENSMUST00000030702 2037 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm21984-201ENSMUST00000123117 822 ntTSL 5 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm11025-201ENSMUST00000140773 466 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
Trim56Q80VI1 Gm2756-201ENSMUST00000195851 400 ntBASIC17.73■□□□□ 0.43
Trim56Q80VI1 Vmn2r-ps89-201ENSMUST00000209195 1010 ntBASIC17.73■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 30.8 ms