Protein–RNA interactions for Protein: Q6PFF0

Scaf4, SR-related CTD-associated factor 4, mousemouse

Known RBP Predictions only

Length 1,209 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Scaf4Q6PFF0 Ddi2-201ENSMUST00000102484 9553 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scaf4Q6PFF0 Clgn-202ENSMUST00000109831 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scaf4Q6PFF0 Pld3-202ENSMUST00000117611 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scaf4Q6PFF0 Zfp12-201ENSMUST00000032591 5265 ntAPPRIS ALT2 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scaf4Q6PFF0 Pank4-201ENSMUST00000030931 2508 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Scaf4Q6PFF0 Gm21451-201ENSMUST00000111062 2775 ntBASIC14.9□□□□□ -0.02
Scaf4Q6PFF0 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Gnpat-201ENSMUST00000034466 2984 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Mdfic-203ENSMUST00000125326 3635 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Bud23-201ENSMUST00000071677 1607 ntAPPRIS ALT2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Fbxo27-202ENSMUST00000108280 2031 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Stx5a-201ENSMUST00000010254 1780 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Fars2-208ENSMUST00000224611 1750 ntAPPRIS P1 BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Olfr129-201ENSMUST00000122318 993 ntBASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Gm3264-202ENSMUST00000166776 882 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Gm25745-201ENSMUST00000174945 133 ntBASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Cpeb3-201ENSMUST00000079754 5899 ntAPPRIS P3 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Smg9-201ENSMUST00000002280 2242 ntAPPRIS P1 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Syk-203ENSMUST00000120135 5363 ntAPPRIS P2 TSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Spopl-203ENSMUST00000132484 6595 ntAPPRIS P1 TSL 5 BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 N6amt1-202ENSMUST00000118115 1951 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Ercc2-203ENSMUST00000108461 2799 ntTSL 1 (best) BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC14.89□□□□□ -0.03
Scaf4Q6PFF0 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Gm44291-201ENSMUST00000203102 2865 ntBASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Leng9-201ENSMUST00000058358 2460 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Rbfox3-201ENSMUST00000017576 3150 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Tbc1d30-201ENSMUST00000064107 5695 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Acss1-201ENSMUST00000028944 3618 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Slc25a51-203ENSMUST00000132815 1005 ntAPPRIS P1 TSL 2 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Fbxo9-203ENSMUST00000159099 1201 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Pym1-202ENSMUST00000163377 1158 ntAPPRIS P4 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 4732471J01Rik-202ENSMUST00000205787 991 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Fbxl19-207ENSMUST00000206893 3449 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Raet1e-204ENSMUST00000181645 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Limk1-201ENSMUST00000015137 3331 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Iqce-202ENSMUST00000077890 2494 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 1700034H15Rik-202ENSMUST00000139827 4354 ntTSL 5 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Prdm5-201ENSMUST00000031973 1488 ntTSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 6030408B16Rik-202ENSMUST00000191426 1947 ntAPPRIS P5 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Ncbp2-201ENSMUST00000023460 2070 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Sh2b2-201ENSMUST00000005188 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Grip2-205ENSMUST00000162300 5206 ntAPPRIS P2 TSL 5 BASIC14.88□□□□□ -0.03
Scaf4Q6PFF0 Mapt-203ENSMUST00000106989 2250 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm9932-201ENSMUST00000194154 2116 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Zfp668-204ENSMUST00000106263 3132 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm45546-201ENSMUST00000211053 2394 ntBASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Nsg2-201ENSMUST00000020537 2239 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm4459-201ENSMUST00000118750 468 ntBASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm16181-201ENSMUST00000118793 567 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Mir6982-201ENSMUST00000184354 68 ntBASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Hint1-201ENSMUST00000020504 636 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Cmc1-201ENSMUST00000044220 1169 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Apof-201ENSMUST00000050901 1258 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Usf3-201ENSMUST00000088356 757 ntAPPRIS ALT2 TSL 5 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Gm43951-201ENSMUST00000204457 2889 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Dtx3-201ENSMUST00000038217 1944 ntAPPRIS P2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Zcchc3-201ENSMUST00000099207 3073 ntAPPRIS P1 BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Sumo3-201ENSMUST00000020501 2630 ntAPPRIS P3 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Cfap69-205ENSMUST00000135252 2188 ntAPPRIS ALT2 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Riox2-201ENSMUST00000023407 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Ints8-203ENSMUST00000108319 3220 ntAPPRIS P1 TSL 1 (best) BASIC14.87□□□□□ -0.03
Scaf4Q6PFF0 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Dlx6-202ENSMUST00000160937 2216 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Ube2f-204ENSMUST00000178627 1363 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Gm27177-203ENSMUST00000184034 1911 ntTSL 5 BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Gatsl3-201ENSMUST00000020699 1574 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Ano7-201ENSMUST00000058682 2963 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Prmt5-201ENSMUST00000023873 2691 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Tap2-201ENSMUST00000025197 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Parm1-201ENSMUST00000040576 5068 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Hmgn2-204ENSMUST00000105893 973 ntTSL 3 BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Spint2-202ENSMUST00000108236 1211 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
Scaf4Q6PFF0 Gm25016-201ENSMUST00000158399 131 ntBASIC14.86□□□□□ -0.03
Retrieved 100 of 76,532 protein–RNA pairs in 37 ms