Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Ttc13-202ENSMUST00000117624 3096 ntTSL 5 BASIC19.48■□□□□ 0.71
Trim28Q62318 Slc35c1-202ENSMUST00000125276 2668 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Rnf25-202ENSMUST00000113721 1451 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
Trim28Q62318 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Crocc-202ENSMUST00000097816 6273 ntTSL 5 BASIC19.47■□□□□ 0.71
Trim28Q62318 Elf3-201ENSMUST00000003135 2095 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Ccnb2-201ENSMUST00000034742 1531 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC19.47■□□□□ 0.71
Trim28Q62318 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 4930500L23Rik-201ENSMUST00000198000 747 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Prok2-204ENSMUST00000203738 695 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Iqcf3-201ENSMUST00000062917 1131 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Lrp5-201ENSMUST00000025856 5161 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Lrfn1-202ENSMUST00000108288 3060 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Gm6756-201ENSMUST00000180647 1620 ntBASIC19.47■□□□□ 0.71
Trim28Q62318 Cdcp2-202ENSMUST00000221740 1623 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trim28Q62318 Dyx1c1-202ENSMUST00000098567 1612 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trim28Q62318 Gm16754-201ENSMUST00000181222 2077 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Safb-207ENSMUST00000182533 3122 ntAPPRIS ALT2 TSL 5 BASIC19.47■□□□□ 0.71
Trim28Q62318 Rarb-201ENSMUST00000063750 3108 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Med15-202ENSMUST00000080936 3263 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
Trim28Q62318 Tmem241-202ENSMUST00000055447 2597 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Rusc2-202ENSMUST00000098106 5325 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Dennd6a-201ENSMUST00000037585 6638 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Itgb4-210ENSMUST00000169928 6160 ntAPPRIS P2 TSL 5 BASIC19.46■□□□□ 0.71
Trim28Q62318 Zfp691-204ENSMUST00000179290 1721 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Slc25a47-201ENSMUST00000057026 1580 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Col13a1-205ENSMUST00000105454 3162 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Orai3-202ENSMUST00000118865 768 ntTSL 3 BASIC19.46■□□□□ 0.71
Trim28Q62318 Hoxa7-202ENSMUST00000134367 807 ntTSL 5 BASIC19.46■□□□□ 0.71
Trim28Q62318 Gm37230-201ENSMUST00000194491 818 ntBASIC19.46■□□□□ 0.71
Trim28Q62318 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
Trim28Q62318 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Chchd5-201ENSMUST00000035481 1325 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Aaed1-207ENSMUST00000222570 3011 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
Trim28Q62318 Ina-201ENSMUST00000037636 3240 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.7
Trim28Q62318 Atp4b-201ENSMUST00000033826 1378 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
Trim28Q62318 Chrna3-202ENSMUST00000214204 2414 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Orai3-203ENSMUST00000121504 2141 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trim28Q62318 Prpf3-207ENSMUST00000161476 2732 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Ncr3-ps-201ENSMUST00000134687 525 ntBASIC19.45■□□□□ 0.7
Trim28Q62318 Gm25144-201ENSMUST00000179561 110 ntBASIC19.45■□□□□ 0.7
Trim28Q62318 Gm25352-201ENSMUST00000179815 110 ntBASIC19.45■□□□□ 0.7
Trim28Q62318 Gm36536-201ENSMUST00000194241 959 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Mrpl4-201ENSMUST00000003386 1288 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Gm6471-201ENSMUST00000097935 805 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Lrch1-205ENSMUST00000228252 3125 ntAPPRIS ALT2 BASIC19.45■□□□□ 0.7
Trim28Q62318 Slc39a4-201ENSMUST00000073428 2224 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Nubpl-201ENSMUST00000040090 2987 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Rmi2-201ENSMUST00000037913 3742 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Rhpn1-202ENSMUST00000121137 2283 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Rimbp3-201ENSMUST00000169803 5787 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
Trim28Q62318 P2ry6-201ENSMUST00000060174 1946 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Gm10564-201ENSMUST00000097750 3113 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Trim28Q62318 Zfp644-205ENSMUST00000112698 5689 ntAPPRIS P2 TSL 5 BASIC19.45■□□□□ 0.7
Trim28Q62318 Gm3002-201ENSMUST00000170480 1955 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trim28Q62318 Gm3005-202ENSMUST00000178728 1955 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trim28Q62318 Ptpre-201ENSMUST00000073961 5410 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Rab33b-201ENSMUST00000054387 3492 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Gata5-201ENSMUST00000015771 3277 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Lonrf3-201ENSMUST00000016383 2911 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC19.44■□□□□ 0.7
Trim28Q62318 Park7-205ENSMUST00000105676 582 ntTSL 5 BASIC19.44■□□□□ 0.7
Trim28Q62318 Gm5566-201ENSMUST00000116118 459 ntBASIC19.44■□□□□ 0.7
Trim28Q62318 Arid2-202ENSMUST00000134985 809 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Gm11535-201ENSMUST00000145517 778 ntTSL 3 BASIC19.44■□□□□ 0.7
Trim28Q62318 Gm35911-201ENSMUST00000198837 677 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trim28Q62318 Timm13-201ENSMUST00000020440 1225 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Plekhb1-207ENSMUST00000116287 1911 ntAPPRIS ALT1 TSL 3 BASIC19.44■□□□□ 0.7
Trim28Q62318 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Ptcd2-201ENSMUST00000022153 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Zfyve19-202ENSMUST00000102519 1505 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Ywhaq-201ENSMUST00000049531 1515 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 AC159621.2-201ENSMUST00000223519 1326 ntBASIC19.44■□□□□ 0.7
Trim28Q62318 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
Trim28Q62318 Ank1-202ENSMUST00000084038 8147 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Cask-201ENSMUST00000033321 4057 ntTSL 5 BASIC19.44■□□□□ 0.7
Trim28Q62318 Kcnh2-202ENSMUST00000115098 3193 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Lrrc14-202ENSMUST00000127208 4849 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Tbc1d9-201ENSMUST00000034145 4631 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
Trim28Q62318 Ankrd63-201ENSMUST00000104937 4861 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
Trim28Q62318 Whrn-201ENSMUST00000063650 4016 ntAPPRIS ALT2 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Stk35-202ENSMUST00000166282 5445 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Zbed5-201ENSMUST00000041466 2492 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Fam185a-201ENSMUST00000056045 3027 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
Trim28Q62318 Spns1-203ENSMUST00000119846 2017 ntTSL 5 BASIC19.43■□□□□ 0.7
Retrieved 100 of 76,532 protein–RNA pairs in 52.3 ms