Protein–RNA interactions for Protein: Q62226

Shh, Sonic hedgehog protein, mousemouse

Predictions only

Length 437 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ShhQ62226 Macrod2-201ENSMUST00000043836 3552 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Tstd3-201ENSMUST00000029915 1588 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Ubtf-205ENSMUST00000107119 3013 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 9630013D21Rik-204ENSMUST00000156790 3096 ntTSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.07□□□□□ -0.16
ShhQ62226 Tmub1-201ENSMUST00000030799 1333 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Phykpl-201ENSMUST00000020625 1609 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Gm7669-201ENSMUST00000210184 1603 ntBASIC14.07□□□□□ -0.16
ShhQ62226 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC14.07□□□□□ -0.16
ShhQ62226 Zkscan3-201ENSMUST00000070785 2561 ntAPPRIS P1 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Cnbp-203ENSMUST00000113619 1661 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.07□□□□□ -0.16
ShhQ62226 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Efcab14-204ENSMUST00000106525 2792 ntAPPRIS ALT2 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Sp8-201ENSMUST00000063918 4478 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Rapgef6-205ENSMUST00000108895 1829 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Gjb1-202ENSMUST00000119080 1513 ntAPPRIS P1 TSL 3 BASIC14.06□□□□□ -0.16
ShhQ62226 4930431F12Rik-202ENSMUST00000199309 2263 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Iqcj-201ENSMUST00000063263 1579 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Adcy1-201ENSMUST00000020706 12259 ntAPPRIS P1 TSL 2 BASIC14.06□□□□□ -0.16
ShhQ62226 1700066M21Rik-201ENSMUST00000042734 3008 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC14.06□□□□□ -0.16
ShhQ62226 Rrp8-201ENSMUST00000033179 3053 ntAPPRIS P3 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Washc3-202ENSMUST00000171151 837 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC14.06□□□□□ -0.16
ShhQ62226 Pantr2-201ENSMUST00000180589 463 ntTSL 3 BASIC14.06□□□□□ -0.16
ShhQ62226 Gm27494-201ENSMUST00000184735 189 ntBASIC14.06□□□□□ -0.16
ShhQ62226 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 A930016O22Rik-201ENSMUST00000047020 1214 ntTSL 2 BASIC14.06□□□□□ -0.16
ShhQ62226 4933434E20Rik-204ENSMUST00000159064 1344 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Gm17501-201ENSMUST00000181247 1700 ntTSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 3110082I17Rik-201ENSMUST00000066052 1429 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Cadm3-202ENSMUST00000111220 5155 ntAPPRIS P1 TSL 1 (best) BASIC14.06□□□□□ -0.16
ShhQ62226 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Stpg1-201ENSMUST00000063707 2380 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Arvcf-205ENSMUST00000115614 4698 ntAPPRIS ALT2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Nipal3-201ENSMUST00000102549 5153 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Gm45605-201ENSMUST00000210265 4269 ntBASIC14.05□□□□□ -0.16
ShhQ62226 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Ggnbp2-213ENSMUST00000172405 2950 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Snai3-201ENSMUST00000006762 1628 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Ddx49-201ENSMUST00000008004 2137 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Fbxo30-202ENSMUST00000129456 5060 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Fgfr1op2-203ENSMUST00000067404 2766 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Xrcc2-204ENSMUST00000134972 464 ntTSL 3 BASIC14.05□□□□□ -0.16
ShhQ62226 Tgfb1i1-203ENSMUST00000163609 1053 ntTSL 5 BASIC14.05□□□□□ -0.16
ShhQ62226 Zdhhc23-202ENSMUST00000165648 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Zfp511-201ENSMUST00000168194 1076 ntAPPRIS P1 TSL 2 BASIC14.05□□□□□ -0.16
ShhQ62226 Ube2i-208ENSMUST00000173084 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Rabep1-208ENSMUST00000179114 1264 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 1600014C10Rik-207ENSMUST00000179503 784 ntTSL 5 BASIC14.05□□□□□ -0.16
ShhQ62226 Gm10419-203ENSMUST00000197854 653 ntTSL 5 BASIC14.05□□□□□ -0.16
ShhQ62226 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
ShhQ62226 Pecr-201ENSMUST00000027381 1186 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 B4galt2-203ENSMUST00000106421 1801 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Folr1-204ENSMUST00000106985 1313 ntAPPRIS P1 TSL 5 BASIC14.05□□□□□ -0.16
ShhQ62226 Mastl-201ENSMUST00000028119 5590 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Sec24a-204ENSMUST00000109097 6581 ntAPPRIS P3 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Retreg3-202ENSMUST00000107295 3179 ntTSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Fam84b-201ENSMUST00000100635 5565 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Mdh2-201ENSMUST00000019323 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Hmgb3-201ENSMUST00000015361 1544 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC14.05□□□□□ -0.16
ShhQ62226 H2-K1-201ENSMUST00000025181 1605 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Edem2-201ENSMUST00000040833 2290 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Dok2-201ENSMUST00000022698 1795 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Rpn2-201ENSMUST00000029171 2621 ntTSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 AC154412.1-201ENSMUST00000226540 2786 ntBASIC14.04□□□□□ -0.16
ShhQ62226 Lmnb1-201ENSMUST00000025486 2843 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Kpna4-201ENSMUST00000029353 8819 ntTSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Gm5312-201ENSMUST00000203728 547 ntBASIC14.04□□□□□ -0.16
ShhQ62226 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Syce1l-201ENSMUST00000034219 896 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Ly6k-201ENSMUST00000060301 791 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Syce1l-202ENSMUST00000095173 791 ntAPPRIS P4 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Tbc1d1-203ENSMUST00000119756 4760 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Ppp3cb-201ENSMUST00000022355 3074 ntAPPRIS ALT1 TSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Malt1-201ENSMUST00000049248 5073 ntAPPRIS P2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Xpo1-202ENSMUST00000102869 6004 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Map4-201ENSMUST00000035055 6091 ntAPPRIS P3 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Atat1-202ENSMUST00000061052 1452 ntAPPRIS ALT2 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Trappc5-201ENSMUST00000044857 2546 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Samm50-201ENSMUST00000023071 1673 ntAPPRIS P1 TSL 1 (best) BASIC14.04□□□□□ -0.16
ShhQ62226 Atg9a-208ENSMUST00000189702 4110 ntAPPRIS P1 TSL 5 BASIC14.04□□□□□ -0.16
ShhQ62226 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.03□□□□□ -0.16
Retrieved 100 of 76,532 protein–RNA pairs in 42.3 ms