Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Gxylt1-201ENSMUST00000049484 6611 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Hoxb1-201ENSMUST00000019117 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Zdhhc23-201ENSMUST00000036321 1380 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Mta1-201ENSMUST00000009099 2826 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col11a1Q61245 Wfdc3-201ENSMUST00000103096 911 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Kmt2b-202ENSMUST00000108154 8454 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Kctd17-202ENSMUST00000159771 986 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
Col11a1Q61245 Adgrg5-205ENSMUST00000166802 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Mir7654-201ENSMUST00000185082 70 ntBASIC16.63■□□□□ 0.25
Col11a1Q61245 4933417O13Rik-202ENSMUST00000208893 1571 ntTSL 5 BASIC16.63■□□□□ 0.25
Col11a1Q61245 Gm3654-202ENSMUST00000210597 472 ntTSL 3 BASIC16.63■□□□□ 0.25
Col11a1Q61245 Sftpa1-201ENSMUST00000022314 851 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Gm8225-201ENSMUST00000090257 879 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Igdcc3-201ENSMUST00000034961 3146 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Ammecr1-201ENSMUST00000041317 5437 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Trim33-202ENSMUST00000106860 5025 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Fn3k-202ENSMUST00000092302 1803 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Ccdc184-201ENSMUST00000031914 2329 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col11a1Q61245 Ube2q2-201ENSMUST00000059555 3456 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 N4bp1-201ENSMUST00000034074 6469 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Adck2-201ENSMUST00000051249 2287 ntTSL 5 BASIC16.62■□□□□ 0.25
Col11a1Q61245 1700049J03Rik-201ENSMUST00000011196 421 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Gm12742-201ENSMUST00000117326 410 ntBASIC16.62■□□□□ 0.25
Col11a1Q61245 Tbx3os1-203ENSMUST00000140101 490 ntTSL 3 BASIC16.62■□□□□ 0.25
Col11a1Q61245 Lamtor2-201ENSMUST00000029698 668 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 2810006K23Rik-202ENSMUST00000111477 1637 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 S100b-201ENSMUST00000036387 1484 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Rab6a-201ENSMUST00000032946 3214 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Ankrd9-202ENSMUST00000128353 2577 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Brd1-201ENSMUST00000088911 4702 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Dlx3-201ENSMUST00000092768 2607 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col11a1Q61245 Ebf1-203ENSMUST00000109268 2864 ntAPPRIS ALT1 TSL 5 BASIC16.62■□□□□ 0.25
Col11a1Q61245 Zfp36l3-201ENSMUST00000071711 2347 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col11a1Q61245 2600006K01Rik-201ENSMUST00000047607 1406 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm14452-201ENSMUST00000118680 1632 ntBASIC16.61■□□□□ 0.25
Col11a1Q61245 Ube2i-207ENSMUST00000172868 2755 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Ltbp4-205ENSMUST00000121175 5118 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Aurkaip1-202ENSMUST00000105591 773 ntAPPRIS P1 TSL 3 BASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm13112-201ENSMUST00000138795 1258 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Mir1982-201ENSMUST00000157368 74 ntBASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm27839-201ENSMUST00000184242 106 ntBASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm2495-201ENSMUST00000191160 466 ntBASIC16.61■□□□□ 0.25
Col11a1Q61245 Slc17a9-201ENSMUST00000094218 2275 ntAPPRIS P1 TSL 5 BASIC16.61■□□□□ 0.25
Col11a1Q61245 Zrsr2-202ENSMUST00000112289 2735 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Col11a1Q61245 4930448E22Rik-202ENSMUST00000215242 2102 ntTSL 5 BASIC16.61■□□□□ 0.25
Col11a1Q61245 Il18r1-204ENSMUST00000193391 1738 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Mmp24-201ENSMUST00000029141 4306 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm15755-201ENSMUST00000133698 659 ntTSL 3 BASIC16.61■□□□□ 0.25
Col11a1Q61245 Slc2a9-207ENSMUST00000143758 1296 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 U2af1l4-216ENSMUST00000166510 835 ntTSL 5 BASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm9726-201ENSMUST00000180321 678 ntBASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm29481-201ENSMUST00000189080 1049 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Gm8463-201ENSMUST00000208573 613 ntBASIC16.61■□□□□ 0.25
Col11a1Q61245 Rasgrp2-201ENSMUST00000035716 2219 ntAPPRIS P1 TSL 2 BASIC16.61■□□□□ 0.25
Col11a1Q61245 Erg-207ENSMUST00000171646 1519 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Lrwd1-201ENSMUST00000006301 2473 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Rara-202ENSMUST00000107473 3238 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Ppef2-201ENSMUST00000031359 2274 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col11a1Q61245 Cadm1-204ENSMUST00000114548 4482 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Tcf3-202ENSMUST00000020379 2829 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Foxd1-201ENSMUST00000105098 5064 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Alox8-202ENSMUST00000094078 1947 ntAPPRIS ALT2 TSL 5 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Ksr1-201ENSMUST00000018478 5495 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Dancr-204ENSMUST00000132389 2347 ntBASIC16.6■□□□□ 0.25
Col11a1Q61245 Arntl2-204ENSMUST00000111639 2923 ntAPPRIS P3 TSL 5 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Tssc4-202ENSMUST00000105920 895 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Ndufa13-201ENSMUST00000110167 1251 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 3110009E18Rik-203ENSMUST00000112644 488 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Mir1247-201ENSMUST00000116706 82 ntBASIC16.6■□□□□ 0.25
Col11a1Q61245 Gm15393-201ENSMUST00000120499 219 ntBASIC16.6■□□□□ 0.25
Col11a1Q61245 Myadml2os-201ENSMUST00000126642 1044 ntTSL 5 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Nat8f4-202ENSMUST00000159755 1129 ntTSL 2 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Ly6g6e-204ENSMUST00000172959 501 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Gm44756-201ENSMUST00000206172 1069 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Selenow-201ENSMUST00000044355 736 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Olfr463-201ENSMUST00000081417 936 ntAPPRIS P1 BASIC16.6■□□□□ 0.25
Col11a1Q61245 Bcam-201ENSMUST00000003061 2429 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Gpx3-201ENSMUST00000082430 1594 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Tyw1-203ENSMUST00000100662 1867 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Gapdh-203ENSMUST00000118875 1420 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Tead3-205ENSMUST00000154873 2775 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
Col11a1Q61245 Urm1-201ENSMUST00000091142 2196 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col11a1Q61245 Eml4-203ENSMUST00000112363 5238 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
Col11a1Q61245 Gm13185-201ENSMUST00000131044 944 ntTSL 3 BASIC16.59■□□□□ 0.25
Col11a1Q61245 Gm17232-201ENSMUST00000164515 453 ntTSL 2 BASIC16.59■□□□□ 0.25
Col11a1Q61245 2810429I04Rik-210ENSMUST00000189464 868 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col11a1Q61245 Ube2a-205ENSMUST00000201068 1298 ntTSL 5 BASIC16.59■□□□□ 0.25
Col11a1Q61245 Scgb3a2-201ENSMUST00000043803 842 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
Col11a1Q61245 Lrif1-202ENSMUST00000098751 929 ntTSL 2 BASIC16.59■□□□□ 0.25
Col11a1Q61245 Hira-201ENSMUST00000004222 4218 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 72.7 ms