Protein–RNA interactions for Protein: Q0EEE2

Ptchd3, Patched domain-containing protein 3, mousemouse

Predictions only

Length 906 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ptchd3Q0EEE2 Hist1h2ab-201ENSMUST00000078369 473 ntAPPRIS P1 BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Fgd1-201ENSMUST00000026296 4001 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Klf15-202ENSMUST00000113530 2374 ntAPPRIS P1 TSL 5 BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Cfl1-202ENSMUST00000209469 2354 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Ptdss1-201ENSMUST00000021990 3424 ntAPPRIS P1 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Gm5049-201ENSMUST00000195878 1590 ntBASIC14.6□□□□□ -0.07
Ptchd3Q0EEE2 Gm10710-201ENSMUST00000047876 3971 ntBASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Mib2-201ENSMUST00000103176 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Zfp553-202ENSMUST00000106312 3342 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Acbd5-206ENSMUST00000155602 1714 ntAPPRIS ALT2 TSL 2 BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Cxcr3-201ENSMUST00000056614 1731 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Mis18bp1-202ENSMUST00000124201 717 ntTSL 3 BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Gas5-203ENSMUST00000159119 665 ntTSL 5 BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Romo1-201ENSMUST00000088610 569 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Foxo3-203ENSMUST00000105502 6848 ntAPPRIS P1 TSL 1 (best) BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC14.59□□□□□ -0.07
Ptchd3Q0EEE2 Clcnka-201ENSMUST00000042617 2428 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Camk2b-209ENSMUST00000109813 4023 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Camk2b-204ENSMUST00000090443 4004 ntTSL 1 (best) BASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Nupl1-207ENSMUST00000225311 2475 ntBASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Lman1-202ENSMUST00000120461 2208 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.07
Ptchd3Q0EEE2 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Sema3b-202ENSMUST00000102529 2875 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rom1-201ENSMUST00000096242 1526 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 AC159649.2-201ENSMUST00000222984 3223 ntBASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Selenoh-201ENSMUST00000102646 783 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm128-202ENSMUST00000107197 1289 ntTSL 2 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Adal-203ENSMUST00000110662 1231 ntTSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Tekt5-202ENSMUST00000115831 1277 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm12781-201ENSMUST00000146269 395 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rprl3-201ENSMUST00000157400 290 ntBASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rpp40-202ENSMUST00000174230 1053 ntTSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Selenoh-206ENSMUST00000189988 390 ntTSL 3 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Hikeshi-207ENSMUST00000207309 835 ntTSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Icam4-202ENSMUST00000215077 1028 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm35154-202ENSMUST00000217008 1093 ntTSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Mgarp-201ENSMUST00000038154 1232 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Alkbh2-201ENSMUST00000053657 1073 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Paox-202ENSMUST00000097967 1024 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm29683-203ENSMUST00000209071 2488 ntTSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gpsm3-201ENSMUST00000038244 1343 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Ebag9-202ENSMUST00000226165 1931 ntAPPRIS P1 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Tgfbr3-201ENSMUST00000031224 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rexo4-202ENSMUST00000114020 2278 ntAPPRIS P2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm12620-201ENSMUST00000119791 1986 ntBASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Gm12612-201ENSMUST00000140182 1986 ntBASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Fgfr1op-202ENSMUST00000097419 3505 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Clstn1-202ENSMUST00000105691 4459 ntAPPRIS ALT2 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Kirrel-202ENSMUST00000107618 7278 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Eomes-201ENSMUST00000035020 3560 ntAPPRIS P3 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Arap2-201ENSMUST00000076623 7306 ntAPPRIS P1 TSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rbm33-202ENSMUST00000059644 9510 ntAPPRIS P2 TSL 5 BASIC14.58□□□□□ -0.08
Ptchd3Q0EEE2 Rgs3-204ENSMUST00000107420 2752 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Dbndd2-204ENSMUST00000109350 1055 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Znhit1-203ENSMUST00000111090 698 ntTSL 2 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Gm12216-201ENSMUST00000117316 1152 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Smim1-210ENSMUST00000146054 707 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Gm1818-201ENSMUST00000169406 1184 ntBASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 AV026068-207ENSMUST00000187718 400 ntTSL 5 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Cbr2-201ENSMUST00000026148 1110 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Fgfr2-207ENSMUST00000117872 4223 ntAPPRIS ALT2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Pcdha11-202ENSMUST00000115657 5360 ntAPPRIS P2 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Pak1ip1-201ENSMUST00000046951 1722 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Rpl3l-202ENSMUST00000170239 1375 ntAPPRIS P1 TSL 5 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Pofut1-203ENSMUST00000099192 1385 ntTSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Las1l-202ENSMUST00000113864 2581 ntAPPRIS ALT2 TSL 5 BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Spdef-201ENSMUST00000025054 1824 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Ptchd3Q0EEE2 Adamts20-201ENSMUST00000035342 6027 ntAPPRIS P1 TSL 1 (best) BASIC14.57□□□□□ -0.08
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms