Protein–RNA interactions for Protein: Q04857

Col6a1, Collagen alpha-1(VI) chain, mousemouse

Predictions only

Length 1,025 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col6a1Q04857 N6amt1-201ENSMUST00000054442 1884 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col6a1Q04857 Gm5184-201ENSMUST00000220417 1702 ntBASIC16.65■□□□□ 0.26
Col6a1Q04857 Galnt6os-201ENSMUST00000160960 1389 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
Col6a1Q04857 Wipf3-204ENSMUST00000132855 4516 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Mbp-206ENSMUST00000102812 2108 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Ext2-201ENSMUST00000028623 2871 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Pde3b-201ENSMUST00000032909 6573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Gjb3-202ENSMUST00000106091 1623 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Nrg1-218ENSMUST00000209107 2972 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Trmt2a-202ENSMUST00000100099 2235 ntAPPRIS P5 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Paxbp1-202ENSMUST00000118522 3973 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Bcor-204ENSMUST00000115513 6941 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Dusp13-203ENSMUST00000120956 1070 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Unkl-205ENSMUST00000161679 1053 ntTSL 5 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Gm5819-201ENSMUST00000171469 465 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Col6a1Q04857 Trp53tg5-201ENSMUST00000017864 934 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 5830408C22Rik-201ENSMUST00000210072 1115 ntTSL 5 BASIC16.64■□□□□ 0.25
Col6a1Q04857 AC166341.4-201ENSMUST00000220625 123 ntBASIC16.64■□□□□ 0.25
Col6a1Q04857 Rbfox2-208ENSMUST00000227930 1218 ntBASIC16.64■□□□□ 0.25
Col6a1Q04857 Chp2-201ENSMUST00000033152 1456 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Klf7-201ENSMUST00000055001 1477 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Trappc11-202ENSMUST00000120987 2060 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Kif7-201ENSMUST00000059836 4521 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Nanos1-201ENSMUST00000088237 3927 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Col6a1Q04857 AC153526.5-201ENSMUST00000218661 2147 ntBASIC16.64■□□□□ 0.25
Col6a1Q04857 Cdkn1a-201ENSMUST00000023829 1910 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Papola-202ENSMUST00000109901 4380 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Gclc-201ENSMUST00000034905 3423 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Ankrd44-210ENSMUST00000179030 6140 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Bhlhe41-201ENSMUST00000032386 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Kcnj6-202ENSMUST00000099508 3086 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col6a1Q04857 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Smarcc1-204ENSMUST00000197984 3538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Lrig2-207ENSMUST00000199070 5991 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Zfx-204ENSMUST00000113927 6933 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 6430548M08Rik-201ENSMUST00000034281 5564 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Wipi1-201ENSMUST00000047186 3338 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Prr29-203ENSMUST00000185986 983 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Gm18187-201ENSMUST00000196476 984 ntBASIC16.63■□□□□ 0.25
Col6a1Q04857 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Gm5771-201ENSMUST00000049079 798 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Tnfsf13-202ENSMUST00000108648 1503 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Bicd2-203ENSMUST00000110085 4588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Alx1-204ENSMUST00000217946 1542 ntTSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Wasf2-201ENSMUST00000084241 5642 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Ntrk2-205ENSMUST00000224402 2284 ntBASIC16.63■□□□□ 0.25
Col6a1Q04857 Rbck1-201ENSMUST00000028964 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Adgrb2-205ENSMUST00000106017 5104 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Rsu1-202ENSMUST00000114791 1604 ntTSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Itfg2-206ENSMUST00000203374 1394 ntAPPRIS ALT2 TSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
Col6a1Q04857 Cnih3-201ENSMUST00000027795 2668 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col6a1Q04857 Tnfrsf1a-201ENSMUST00000032491 2156 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Gm14634-201ENSMUST00000139163 1662 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Rell1-204ENSMUST00000154169 3241 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 F2rl1-201ENSMUST00000022185 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Taf5-201ENSMUST00000026027 3258 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Antxr2-201ENSMUST00000031281 5656 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 AC131104.1-201ENSMUST00000222118 1739 ntTSL 5 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Nrbf2-201ENSMUST00000077839 1813 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Rgs19-204ENSMUST00000108772 779 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Gm6973-201ENSMUST00000117080 721 ntBASIC16.62■□□□□ 0.25
Col6a1Q04857 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Gm9794-201ENSMUST00000202370 423 ntBASIC16.62■□□□□ 0.25
Col6a1Q04857 AC135669.1-201ENSMUST00000213585 412 ntBASIC16.62■□□□□ 0.25
Col6a1Q04857 Myl6b-201ENSMUST00000026428 1026 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Hist1h3g-201ENSMUST00000080859 530 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Rbm26-202ENSMUST00000100327 3634 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Gm45212-201ENSMUST00000205831 3403 ntBASIC16.62■□□□□ 0.25
Col6a1Q04857 Cant1-204ENSMUST00000106288 2873 ntAPPRIS P1 TSL 5 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Rbfox2-209ENSMUST00000228087 1694 ntAPPRIS ALT2 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Syn1-201ENSMUST00000081893 3209 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Gm6588-201ENSMUST00000100882 2313 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Cpne6-207ENSMUST00000171643 2016 ntAPPRIS P3 TSL 5 BASIC16.62■□□□□ 0.25
Col6a1Q04857 Capn15-205ENSMUST00000212520 5216 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
Col6a1Q04857 Il7-203ENSMUST00000192202 2057 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Zmynd11-207ENSMUST00000110638 4003 ntTSL 5 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm13517-201ENSMUST00000120782 1495 ntBASIC16.61■□□□□ 0.25
Col6a1Q04857 Fam57a-205ENSMUST00000169560 1806 ntTSL 5 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Tmem87b-201ENSMUST00000110325 4807 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm40773-201ENSMUST00000218113 1502 ntTSL 5 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Pcdhb22-201ENSMUST00000097609 2266 ntTSL 2 BASIC16.61■□□□□ 0.25
Col6a1Q04857 6430548M08Rik-204ENSMUST00000108951 5531 ntAPPRIS ALT2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Wdr26-207ENSMUST00000162819 6619 ntAPPRIS P2 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Fut7-203ENSMUST00000114278 1990 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Fut7-201ENSMUST00000041654 1970 ntAPPRIS P3 TSL 5 BASIC16.61■□□□□ 0.25
Col6a1Q04857 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Col6a1Q04857 Clvs2-201ENSMUST00000019920 2717 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 27.1 ms