Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Gm8784-201ENSMUST00000222096 1435 ntBASIC12.52□□□□□ -0.41
Hmgb3O54879 Il9r-204ENSMUST00000142396 1542 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Pip5k1c-210ENSMUST00000163075 4208 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Slc8a3-201ENSMUST00000064594 4379 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Gm37297-201ENSMUST00000192974 2384 ntBASIC12.51□□□□□ -0.41
Hmgb3O54879 Sorbs3-204ENSMUST00000227929 2460 ntBASIC12.51□□□□□ -0.41
Hmgb3O54879 Csdc2-201ENSMUST00000038757 2490 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Rnf123-214ENSMUST00000162355 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Dnm1-205ENSMUST00000113365 3257 ntAPPRIS ALT1 TSL 5 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Gm38391-201ENSMUST00000191720 4069 ntBASIC12.51□□□□□ -0.41
Hmgb3O54879 Tmem131l-202ENSMUST00000191758 5555 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 2410018L13Rik-205ENSMUST00000149246 3370 ntTSL 2 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Pla2g16-203ENSMUST00000136756 1901 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 F2-201ENSMUST00000028681 1988 ntAPPRIS P2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Kcnma1-228ENSMUST00000224468 3753 ntAPPRIS ALT2 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Syt8-202ENSMUST00000105976 1289 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Romo1-202ENSMUST00000109597 550 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Syt8-205ENSMUST00000122393 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Oip5-202ENSMUST00000123818 1082 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Uba52-203ENSMUST00000125184 711 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Gm14968-201ENSMUST00000155528 769 ntTSL 3 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Tpsg1-202ENSMUST00000160377 1040 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 AC135963.1-201ENSMUST00000211640 717 ntBASIC12.51□□□□□ -0.41
Hmgb3O54879 Crabp1-201ENSMUST00000034830 802 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Gm7579-201ENSMUST00000097943 732 ntAPPRIS P1 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Gm996-204ENSMUST00000191602 4812 ntAPPRIS P1 TSL 2 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Tmbim1-202ENSMUST00000113796 11011 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Spg21-202ENSMUST00000213957 1302 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Atp2a3-203ENSMUST00000108485 4520 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Csnk1d-201ENSMUST00000018274 3675 ntAPPRIS P4 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Sesn1-201ENSMUST00000041438 2600 ntAPPRIS P3 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Lmnb2-202ENSMUST00000105332 1643 ntTSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Serinc1-201ENSMUST00000020027 2880 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Pqlc3-208ENSMUST00000222203 1706 ntTSL 5 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Bicra-201ENSMUST00000094821 5360 ntAPPRIS P1 TSL 5 BASIC12.51□□□□□ -0.41
Hmgb3O54879 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC12.51□□□□□ -0.41
Hmgb3O54879 Zfp821-203ENSMUST00000212000 2081 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Gm4756-202ENSMUST00000208039 2344 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Hdhd2-203ENSMUST00000097522 2318 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Fam189b-203ENSMUST00000119707 2415 ntTSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Pcsk6-202ENSMUST00000098391 4207 ntAPPRIS ALT2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 B3gnt7-201ENSMUST00000113306 2582 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Plekha4-201ENSMUST00000051810 2660 ntAPPRIS P2 TSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Dzip1-202ENSMUST00000047208 4476 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Il7-205ENSMUST00000194279 4858 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Insrr-201ENSMUST00000029711 5102 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Spag9-202ENSMUST00000041956 7340 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Retreg3-201ENSMUST00000017946 3165 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Glis3-209ENSMUST00000162022 7514 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 AC159649.2-201ENSMUST00000222984 3223 ntBASIC12.5□□□□□ -0.41
Hmgb3O54879 Jtb-202ENSMUST00000119304 878 ntTSL 3 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Gm13524-201ENSMUST00000125869 662 ntTSL 3 BASIC12.5□□□□□ -0.41
Hmgb3O54879 BC051226-201ENSMUST00000172526 837 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Gm20403-201ENSMUST00000173803 372 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC12.5□□□□□ -0.41
Hmgb3O54879 9130019P16Rik-203ENSMUST00000185712 650 ntTSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Lat-201ENSMUST00000032997 1235 ntAPPRIS P2 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Ldlrad1-201ENSMUST00000094916 1093 ntAPPRIS P1 TSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Trappc3-201ENSMUST00000030660 1336 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Mier2-212ENSMUST00000172158 1400 ntTSL 5 BASIC12.5□□□□□ -0.41
Hmgb3O54879 Ndufv3-201ENSMUST00000046288 1537 ntAPPRIS P4 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Gm45760-201ENSMUST00000212190 1782 ntBASIC12.5□□□□□ -0.41
Hmgb3O54879 Gm5357-201ENSMUST00000212720 1924 ntBASIC12.5□□□□□ -0.41
Hmgb3O54879 Camk2g-217ENSMUST00000226630 1937 ntBASIC12.5□□□□□ -0.41
Hmgb3O54879 Dhodh-201ENSMUST00000123605 2039 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Large2-202ENSMUST00000090582 2291 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Msx3-201ENSMUST00000055353 2356 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Tmem143-203ENSMUST00000209350 2466 ntTSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Eif3f-201ENSMUST00000033342 2514 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Pbx3-201ENSMUST00000040638 2587 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Spg20-204ENSMUST00000118118 3981 ntAPPRIS P3 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Vipr1-201ENSMUST00000035115 4902 ntAPPRIS P1 TSL 1 (best) BASIC12.5□□□□□ -0.41
Hmgb3O54879 Nisch-213ENSMUST00000168206 4990 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Rab9b-201ENSMUST00000058814 3980 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Cpeb3-208ENSMUST00000132580 3148 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Syn2-201ENSMUST00000009538 2708 ntAPPRIS P4 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Rai2-202ENSMUST00000112338 2165 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Mfsd2a-201ENSMUST00000030408 2151 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Ahdc1-203ENSMUST00000105915 6341 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Gss-201ENSMUST00000079691 1963 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Dpysl5-201ENSMUST00000088081 5022 ntAPPRIS P1 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Adgrb2-206ENSMUST00000106018 4470 ntAPPRIS ALT2 TSL 5 BASIC12.49□□□□□ -0.41
Hmgb3O54879 Gm12999-201ENSMUST00000124471 485 ntTSL 2 BASIC12.49□□□□□ -0.41
Hmgb3O54879 Dohh-206ENSMUST00000131968 672 ntAPPRIS P1 TSL 3 BASIC12.49□□□□□ -0.41
Hmgb3O54879 Cox7a2l-202ENSMUST00000167741 1147 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Sct-202ENSMUST00000167790 507 ntAPPRIS P3 TSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC12.49□□□□□ -0.41
Hmgb3O54879 Gm26644-201ENSMUST00000181365 958 ntTSL 1 (best) BASIC12.49□□□□□ -0.41
Hmgb3O54879 Cib1-207ENSMUST00000206084 772 ntTSL 3 BASIC12.49□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 46.3 ms