Protein–RNA interactions for Protein: A3KFM7

Chd6, Chromodomain-helicase-DNA-binding protein 6, mousemouse

Predictions only

Length 2,711 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd6A3KFM7 Adam22-201ENSMUST00000046838 2773 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Gpaa1-201ENSMUST00000023221 2107 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Men1-204ENSMUST00000113500 2742 ntAPPRIS P2 TSL 5 BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Vav3-201ENSMUST00000046864 5019 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Abcd4-201ENSMUST00000021666 2309 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Lin9-203ENSMUST00000192561 3160 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Cnppd1-208ENSMUST00000190679 2062 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Trim50-201ENSMUST00000065785 1803 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Dtx2-202ENSMUST00000111142 2650 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Cetn4-205ENSMUST00000140956 2981 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Zfp862-ps-203ENSMUST00000203848 1776 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Fst-201ENSMUST00000022287 2556 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Htr3a-202ENSMUST00000217289 1987 ntAPPRIS ALT2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Slc29a1-202ENSMUST00000064889 1988 ntAPPRIS P3 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Gm7895-201ENSMUST00000187459 1173 ntBASIC12.12□□□□□ -0.47
Chd6A3KFM7 Gm38000-201ENSMUST00000192390 1215 ntBASIC12.12□□□□□ -0.47
Chd6A3KFM7 Gm45865-201ENSMUST00000211815 945 ntBASIC12.12□□□□□ -0.47
Chd6A3KFM7 Ndufb3-201ENSMUST00000027193 763 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Lhfpl3-202ENSMUST00000197992 3115 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Dnajc19-201ENSMUST00000011029 2499 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Fhl2-202ENSMUST00000185893 1421 ntAPPRIS P1 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Syngr2-201ENSMUST00000026649 1520 ntAPPRIS P2 TSL 1 (best) BASIC12.12□□□□□ -0.47
Chd6A3KFM7 Sufu-202ENSMUST00000111867 1747 ntAPPRIS ALT1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Txn2-202ENSMUST00000100486 676 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 1810043G02Rik-202ENSMUST00000105398 899 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Cd27-202ENSMUST00000112281 832 ntTSL 3 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm12749-201ENSMUST00000122138 1159 ntBASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm38182-203ENSMUST00000192984 993 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Pcdhgc5-204ENSMUST00000193941 593 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm38266-201ENSMUST00000194931 421 ntBASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm43758-201ENSMUST00000199500 367 ntBASIC12.11□□□□□ -0.47
Chd6A3KFM7 Tas2r137-201ENSMUST00000064932 1073 ntAPPRIS P1 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Wdr53-201ENSMUST00000023474 1394 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 St3gal2-201ENSMUST00000034197 4396 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm11738-201ENSMUST00000134069 2158 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Zdhhc19-201ENSMUST00000064192 1323 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Smarcad1-201ENSMUST00000031984 5168 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 D930048G16Rik-201ENSMUST00000180975 2266 ntTSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Haglr-201ENSMUST00000100000 2085 ntBASIC12.11□□□□□ -0.47
Chd6A3KFM7 Pqlc1-202ENSMUST00000091798 1989 ntAPPRIS P3 TSL 5 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Ankrd22-201ENSMUST00000025686 1766 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Dhrs4-201ENSMUST00000022821 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm11684-201ENSMUST00000144975 757 ntTSL 5 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm8318-201ENSMUST00000182954 872 ntBASIC12.11□□□□□ -0.47
Chd6A3KFM7 Gm42817-201ENSMUST00000198962 607 ntTSL 3 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Keap1-201ENSMUST00000049567 3172 ntAPPRIS P2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Pdlim7-201ENSMUST00000046246 1697 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Fam109a-203ENSMUST00000198271 2335 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Mfsd4b1-201ENSMUST00000163705 2677 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC12.11□□□□□ -0.47
Chd6A3KFM7 3110082I17Rik-204ENSMUST00000198474 2030 ntTSL 2 BASIC12.11□□□□□ -0.47
Chd6A3KFM7 Ubr5-201ENSMUST00000110336 9242 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Amigo1-202ENSMUST00000106656 5482 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Hist1h4m-201ENSMUST00000104941 402 ntAPPRIS P1 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm15444-201ENSMUST00000148335 388 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm43118-201ENSMUST00000199149 775 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 Atraid-205ENSMUST00000201136 894 ntAPPRIS ALT2 TSL 3 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 4930438A08Rik-202ENSMUST00000208022 918 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm8463-201ENSMUST00000208573 613 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 CT573034.1-201ENSMUST00000222983 313 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 AC121598.2-201ENSMUST00000228376 2325 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 Hivep3-201ENSMUST00000084306 2973 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 Sergef-201ENSMUST00000033127 1465 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gulp1-203ENSMUST00000160854 1399 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm29455-202ENSMUST00000186697 1369 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Nat3-201ENSMUST00000070514 1395 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Prmt6-203ENSMUST00000190378 3051 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gtf2a2-202ENSMUST00000118198 893 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Cd180-203ENSMUST00000170878 842 ntTSL 3 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Cd180-205ENSMUST00000172138 518 ntTSL 2 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Rps4l-202ENSMUST00000204242 789 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 AC165157.4-201ENSMUST00000220587 139 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 AC153938.1-201ENSMUST00000220354 1425 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Rnf167-201ENSMUST00000037534 1833 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 4930447C04Rik-202ENSMUST00000110489 1988 ntAPPRIS ALT2 TSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gpr12-203ENSMUST00000197431 1455 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Il17re-201ENSMUST00000053569 1898 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Wac-216ENSMUST00000171486 1608 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Fbxl3-206ENSMUST00000145693 3352 ntAPPRIS P1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Ptbp2-213ENSMUST00000200097 3777 ntAPPRIS ALT1 TSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 C530008M17Rik-205ENSMUST00000121851 1165 ntTSL 1 (best) BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Mir7654-201ENSMUST00000185082 70 ntBASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm43298-201ENSMUST00000200887 866 ntTSL 3 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm45505-201ENSMUST00000210252 948 ntTSL 5 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Gm45720-201ENSMUST00000211881 484 ntTSL 3 BASIC12.1□□□□□ -0.47
Chd6A3KFM7 Mfsd12-201ENSMUST00000044844 3971 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Chd6A3KFM7 Nt5c3b-205ENSMUST00000107399 1427 ntTSL 1 (best) BASIC12.09□□□□□ -0.47
Chd6A3KFM7 Rnf135-201ENSMUST00000017839 1984 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Chd6A3KFM7 Fnbp1-204ENSMUST00000100208 1859 ntTSL 5 BASIC12.09□□□□□ -0.47
Chd6A3KFM7 Zscan30-202ENSMUST00000224144 1458 ntBASIC12.09□□□□□ -0.47
Chd6A3KFM7 Col13a1-203ENSMUST00000105452 3037 ntAPPRIS ALT2 TSL 5 BASIC12.09□□□□□ -0.47
Chd6A3KFM7 Plaa-201ENSMUST00000107107 2784 ntAPPRIS P1 TSL 1 (best) BASIC12.09□□□□□ -0.47
Retrieved 100 of 76,532 protein–RNA pairs in 21.4 ms