Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Atp13a3-201ENSMUST00000061350 7220 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Mier2-201ENSMUST00000062855 2562 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Mrpl58-202ENSMUST00000103036 749 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Drap1-202ENSMUST00000113673 744 ntTSL 2 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Aurkaip1-201ENSMUST00000084097 1159 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Grin1os-201ENSMUST00000129723 2891 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Kcnh1-201ENSMUST00000078470 7242 ntAPPRIS P3 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Btaf1-201ENSMUST00000099494 7204 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Ccdc24-201ENSMUST00000106422 1365 ntTSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Cul3-201ENSMUST00000163119 4709 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Gm38058-201ENSMUST00000194323 4368 ntBASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Vps51-204ENSMUST00000159832 3048 ntAPPRIS P1 TSL 5 BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC17.23■□□□□ 0.35
Trim11Q99PQ2 Marveld3-201ENSMUST00000001722 1330 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Asb10-203ENSMUST00000119657 1536 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Pde4d-204ENSMUST00000117879 1724 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Prss41-204ENSMUST00000151797 1743 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Prdm4-207ENSMUST00000220032 3962 ntTSL 5 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Ddc-201ENSMUST00000066237 1922 ntAPPRIS P1 TSL 5 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gm7222-201ENSMUST00000117512 906 ntBASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Slbp-205ENSMUST00000139518 1191 ntAPPRIS ALT2 TSL 2 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gm21887-202ENSMUST00000179760 483 ntAPPRIS ALT2 TSL 5 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gsdmcl2-204ENSMUST00000186026 736 ntBASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gsdmcl1-202ENSMUST00000190937 735 ntBASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gm45091-201ENSMUST00000205799 504 ntTSL 3 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Gm6376-201ENSMUST00000209407 580 ntBASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Cdhr5-201ENSMUST00000080654 2133 ntAPPRIS P3 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Trappc12-203ENSMUST00000170994 2818 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Tmem81-202ENSMUST00000188789 1751 ntAPPRIS P1 BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Grhl2-203ENSMUST00000161405 1996 ntTSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Kif12-201ENSMUST00000030042 2250 ntAPPRIS P2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Cacna1b-201ENSMUST00000041342 6984 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Usp33-202ENSMUST00000117492 3886 ntAPPRIS ALT2 TSL 1 (best) BASIC17.22■□□□□ 0.35
Trim11Q99PQ2 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Dnmt3b-210ENSMUST00000109774 4320 ntAPPRIS P4 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Acot4-201ENSMUST00000021652 6203 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Psmd5-201ENSMUST00000028225 4397 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Gm9768-201ENSMUST00000206007 2861 ntBASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Cdpf1-203ENSMUST00000134631 786 ntAPPRIS P1 TSL 5 BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 6430573P05Rik-202ENSMUST00000192648 597 ntTSL 3 BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Fosb-206ENSMUST00000208446 1090 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Timm10b-211ENSMUST00000210350 529 ntAPPRIS ALT2 TSL 2 BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 D830030K20Rik-204ENSMUST00000225885 1142 ntBASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Edem3-201ENSMUST00000059498 6327 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Furin-203ENSMUST00000122232 4286 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Efs-202ENSMUST00000227037 2540 ntBASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Tmem94-201ENSMUST00000093912 5329 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Frmd4b-203ENSMUST00000113355 4913 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC17.21■□□□□ 0.35
Trim11Q99PQ2 Eftud2-202ENSMUST00000107060 3339 ntTSL 1 (best) BASIC17.21■□□□□ 0.34
Trim11Q99PQ2 Nell1-201ENSMUST00000081872 6617 ntAPPRIS P1 TSL 1 (best) BASIC17.21■□□□□ 0.34
Trim11Q99PQ2 Itgav-202ENSMUST00000111740 6788 ntAPPRIS ALT2 TSL 5 BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Mllt11-201ENSMUST00000065482 1923 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Slc24a3-202ENSMUST00000110007 4048 ntAPPRIS ALT2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Ndufs7-202ENSMUST00000105364 983 ntAPPRIS P1 TSL 5 BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 1700108N11Rik-201ENSMUST00000153051 917 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Gm5253-201ENSMUST00000187104 1025 ntBASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Gm9682-201ENSMUST00000197505 556 ntBASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC17.2■□□□□ 0.34
Trim11Q99PQ2 AC140264.2-201ENSMUST00000219668 289 ntTSL 2 BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Prm1-201ENSMUST00000023144 469 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Hist1h3c-201ENSMUST00000091752 630 ntAPPRIS P1 BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Pwwp2a-201ENSMUST00000061070 3277 ntAPPRIS P2 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Wdr47-201ENSMUST00000051145 4222 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Gm26608-201ENSMUST00000180740 1954 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Gm26547-201ENSMUST00000181186 1508 ntTSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Car7-201ENSMUST00000056051 1538 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Dlat-201ENSMUST00000034567 4035 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Cab39-202ENSMUST00000113360 3805 ntAPPRIS P1 TSL 1 (best) BASIC17.2■□□□□ 0.34
Trim11Q99PQ2 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC17.2■□□□□ 0.34
Retrieved 100 of 76,532 protein–RNA pairs in 43.4 ms