Protein–RNA interactions for Protein: Q6PDX6

Rnf220, E3 ubiquitin-protein ligase Rnf220, mousemouse

Predictions only

Length 566 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rnf220Q6PDX6 Mir1668-201ENSMUST00000184114 107 ntBASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Chaf1b-201ENSMUST00000023666 1922 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Slc45a1-201ENSMUST00000037827 3387 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Homer2-206ENSMUST00000207983 1634 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Gjb6-201ENSMUST00000039380 2105 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Casc4-203ENSMUST00000089915 3475 ntTSL 2 BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Sirt2-201ENSMUST00000072965 1843 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Otol1-201ENSMUST00000053013 2161 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Ube2d2b-201ENSMUST00000072578 1678 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Gm17315-201ENSMUST00000181408 2504 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Hspa8-202ENSMUST00000117557 2019 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Tbc1d16-203ENSMUST00000207655 2855 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Rnf220Q6PDX6 Fhad1-202ENSMUST00000105779 4263 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Ap1s2-202ENSMUST00000069041 2226 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Ppp3cb-205ENSMUST00000161445 3298 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Ddhd1-202ENSMUST00000087320 9820 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Dnaaf5-201ENSMUST00000026975 3450 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Hexb-201ENSMUST00000022169 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Mrps30-201ENSMUST00000022245 3319 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Myo16-204ENSMUST00000208309 2462 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 2810013P06Rik-201ENSMUST00000186531 2137 ntBASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Mob2-206ENSMUST00000211206 2140 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Gtf3a-201ENSMUST00000132102 1426 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Gm32996-201ENSMUST00000199828 1447 ntBASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Hnrnpa2b1-204ENSMUST00000203220 1638 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 C430014B12Rik-202ENSMUST00000186858 657 ntTSL 2 BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Tinf2-205ENSMUST00000227842 2001 ntAPPRIS ALT2 BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Phactr3-201ENSMUST00000103065 2642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Gm26752-201ENSMUST00000181086 1537 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 AC148324.1-201ENSMUST00000219034 4240 ntBASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 BC003331-205ENSMUST00000111913 3273 ntAPPRIS P3 TSL 5 BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Kcnk16-202ENSMUST00000225596 2127 ntBASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Zbtb45-202ENSMUST00000172240 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Rnf220Q6PDX6 Zfp316-202ENSMUST00000161448 6891 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Irak2-202ENSMUST00000089022 2974 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Lzts3-203ENSMUST00000110260 3827 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 A530083I20Rik-201ENSMUST00000180486 2421 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Kptn-201ENSMUST00000006178 1630 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Npm1-201ENSMUST00000075641 1633 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Cgnl1-203ENSMUST00000122065 4487 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Phf21a-206ENSMUST00000111292 2461 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Tspan11-201ENSMUST00000032501 5188 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Hps5-201ENSMUST00000014562 4953 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Arid4b-201ENSMUST00000039538 5844 ntTSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Fam57b-202ENSMUST00000098032 1894 ntTSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm13003-201ENSMUST00000151040 2904 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Prpf3-201ENSMUST00000015892 2933 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Cd82-205ENSMUST00000116457 1683 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gtf2h4-201ENSMUST00000001565 1679 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm13559-201ENSMUST00000120476 863 ntBASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 4930515G01Rik-201ENSMUST00000173208 1247 ntBASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Mapk9-210ENSMUST00000178543 4677 ntAPPRIS ALT1 TSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm3272-201ENSMUST00000181181 1229 ntBASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 5430416N02Rik-202ENSMUST00000181873 626 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Pcyox1-206ENSMUST00000204116 546 ntTSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Rpl18-204ENSMUST00000209693 535 ntTSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 4933427E11Rik-201ENSMUST00000056711 1214 ntBASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gm10566-201ENSMUST00000086739 996 ntBASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Rtl8a-201ENSMUST00000088779 1195 ntAPPRIS P1 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Foxp1-208ENSMUST00000113329 1926 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Carmil3-201ENSMUST00000076236 4602 ntAPPRIS P1 TSL 2 BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gbe1-207ENSMUST00000171132 3303 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Irf7-202ENSMUST00000097952 1764 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 4930474H06Rik-201ENSMUST00000132822 1590 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Efemp1-201ENSMUST00000020759 2037 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Rsph6a-202ENSMUST00000076887 1580 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Mif4gd-201ENSMUST00000021087 1372 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Gsdme-201ENSMUST00000031845 2502 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Rnf220Q6PDX6 Col18a1-201ENSMUST00000072755 5595 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Rnf220Q6PDX6 Pnrc2-201ENSMUST00000030436 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Rnf220Q6PDX6 Acot6-202ENSMUST00000222921 3622 ntBASIC14.33□□□□□ -0.11
Rnf220Q6PDX6 D230025D16Rik-201ENSMUST00000034361 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Gm1673-203ENSMUST00000114383 511 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Gm15690-201ENSMUST00000128728 432 ntTSL 3 BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 AC159205.6-201ENSMUST00000224935 887 ntBASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Nme3-201ENSMUST00000024978 715 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Snrnp35-201ENSMUST00000031349 1115 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Rnf220Q6PDX6 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 31 ms