Protein–RNA interactions for Protein: Q61321

Six4, Homeobox protein SIX4, mousemouse

Predictions only

Length 775 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Six4Q61321 Ttll5-201ENSMUST00000040179 5081 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Muc3a-201ENSMUST00000179412 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Fkbp4-201ENSMUST00000032508 2217 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 1110004F10Rik-203ENSMUST00000106608 927 ntTSL 3 BASIC15.23■□□□□ 0.03
Six4Q61321 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC15.23■□□□□ 0.03
Six4Q61321 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Gm11906-201ENSMUST00000124792 680 ntTSL 5 BASIC15.23■□□□□ 0.03
Six4Q61321 Gm27002-201ENSMUST00000182789 620 ntTSL 2 BASIC15.23■□□□□ 0.03
Six4Q61321 Gm5712-201ENSMUST00000199748 1043 ntBASIC15.23■□□□□ 0.03
Six4Q61321 Gm44596-201ENSMUST00000204223 647 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Six4Q61321 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC15.23■□□□□ 0.03
Six4Q61321 Fmr1nb-201ENSMUST00000069731 799 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC15.23■□□□□ 0.03
Six4Q61321 Gypc-203ENSMUST00000174459 2180 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC15.23■□□□□ 0.03
Six4Q61321 C77080-201ENSMUST00000052602 5187 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC15.23■□□□□ 0.03
Six4Q61321 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Gm16425-201ENSMUST00000118143 3130 ntBASIC15.23■□□□□ 0.03
Six4Q61321 Ccdc137-201ENSMUST00000058370 2778 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Clip2-202ENSMUST00000100647 4994 ntAPPRIS P4 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
Six4Q61321 Meis2-204ENSMUST00000110906 3229 ntTSL 2 BASIC15.22■□□□□ 0.03
Six4Q61321 Tex19.2-201ENSMUST00000039146 2046 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 2310011J03Rik-201ENSMUST00000020341 1649 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Parp16-205ENSMUST00000216702 1643 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Fam124a-201ENSMUST00000039064 3558 ntAPPRIS P1 TSL 5 BASIC15.22■□□□□ 0.03
Six4Q61321 Zfc3h1-201ENSMUST00000036044 6957 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Zfp316-201ENSMUST00000051665 3054 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Trem2-202ENSMUST00000113237 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Gm16198-201ENSMUST00000118766 670 ntBASIC15.22■□□□□ 0.03
Six4Q61321 Gm14494-201ENSMUST00000118786 435 ntBASIC15.22■□□□□ 0.03
Six4Q61321 Lgals3-204ENSMUST00000150290 1298 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Fau-202ENSMUST00000178310 571 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Rac3-201ENSMUST00000018156 1076 ntAPPRIS P1 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC15.22■□□□□ 0.03
Six4Q61321 Ogfod2-207ENSMUST00000196627 532 ntTSL 3 BASIC15.22■□□□□ 0.03
Six4Q61321 Gm43332-201ENSMUST00000202511 1044 ntBASIC15.22■□□□□ 0.03
Six4Q61321 Gm36584-201ENSMUST00000209046 708 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Gm45747-201ENSMUST00000212203 999 ntBASIC15.22■□□□□ 0.03
Six4Q61321 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 G630022F23Rik-201ENSMUST00000202923 3627 ntBASIC15.22■□□□□ 0.03
Six4Q61321 Axin1-201ENSMUST00000074370 3777 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Impdh1-205ENSMUST00000160878 2314 ntTSL 5 BASIC15.22■□□□□ 0.03
Six4Q61321 Mapk8ip3-201ENSMUST00000088345 5543 ntAPPRIS P3 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC15.22■□□□□ 0.03
Six4Q61321 Cspp1-205ENSMUST00000122156 2535 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Rgs14-201ENSMUST00000063771 2356 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Gm10814-201ENSMUST00000180505 1933 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Sbf2-213ENSMUST00000171218 1476 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Gsg1-201ENSMUST00000087729 1307 ntAPPRIS P4 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Upf1-202ENSMUST00000215817 4518 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Tbc1d10b-201ENSMUST00000120705 3614 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Islr2-203ENSMUST00000163897 4303 ntAPPRIS P3 TSL 2 BASIC15.21■□□□□ 0.03
Six4Q61321 Slc6a17-208ENSMUST00000169449 6322 ntAPPRIS ALT1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Slc6a17-201ENSMUST00000029499 6308 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Agbl3-204ENSMUST00000115016 3734 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Gm13344-201ENSMUST00000137714 1557 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Dek-201ENSMUST00000021807 2556 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Trafd1-202ENSMUST00000120784 2425 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Gm21586-201ENSMUST00000107988 264 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Gm21953-201ENSMUST00000108002 264 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Six4Q61321 Dlk1-203ENSMUST00000109842 1129 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Gm15467-201ENSMUST00000120582 445 ntBASIC15.21■□□□□ 0.03
Six4Q61321 Slc39a1-ps-201ENSMUST00000120862 969 ntBASIC15.21■□□□□ 0.03
Six4Q61321 Hoxb8-203ENSMUST00000168043 1141 ntAPPRIS P1 TSL 5 BASIC15.21■□□□□ 0.03
Six4Q61321 Gm20878-208ENSMUST00000181518 264 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Hddc3-206ENSMUST00000206074 565 ntTSL 2 BASIC15.21■□□□□ 0.03
Six4Q61321 Id4-201ENSMUST00000021810 3849 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 AC174742.1-201ENSMUST00000218272 304 ntBASIC15.21■□□□□ 0.03
Six4Q61321 CT010506.4-201ENSMUST00000225457 351 ntBASIC15.21■□□□□ 0.03
Six4Q61321 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC15.21■□□□□ 0.03
Six4Q61321 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Eda-205ENSMUST00000113778 4942 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Eda-207ENSMUST00000113780 4915 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Eda-208ENSMUST00000113781 4915 ntTSL 1 (best) BASIC15.21■□□□□ 0.03
Six4Q61321 Ppp4r3a-202ENSMUST00000163095 4083 ntTSL 5 BASIC15.21■□□□□ 0.03
Six4Q61321 Gm29208-203ENSMUST00000213687 2219 ntTSL 5 BASIC15.21■□□□□ 0.03
Six4Q61321 Zxdc-202ENSMUST00000075117 4126 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six4Q61321 Sox1ot-201ENSMUST00000080795 5064 ntTSL 5 BASIC15.21■□□□□ 0.02
Six4Q61321 Comtd1-202ENSMUST00000124549 2314 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six4Q61321 Ube2d3-212ENSMUST00000197859 3833 ntAPPRIS P2 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six4Q61321 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
Six4Q61321 1700029J07Rik-202ENSMUST00000098786 1340 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Dvl2-207ENSMUST00000190940 5037 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Rtn3-201ENSMUST00000025667 2841 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Dnajc8-206ENSMUST00000105940 772 ntTSL 5 BASIC15.2■□□□□ 0.02
Six4Q61321 Gm4995-201ENSMUST00000117247 432 ntBASIC15.2■□□□□ 0.02
Six4Q61321 Dbi-207ENSMUST00000151708 491 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Six4Q61321 Gm15758-201ENSMUST00000161681 695 ntTSL 5 BASIC15.2■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 29.4 ms