Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Mkl2-203ENSMUST00000115809 667 ntTSL 2 BASIC16.67■□□□□ 0.26
Col11a1Q61245 1700012C14Rik-201ENSMUST00000132023 498 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Gm42906-201ENSMUST00000202365 408 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
Col11a1Q61245 1700123K08Rik-201ENSMUST00000031501 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Ccdc171-204ENSMUST00000126429 1388 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Ppp1r18-206ENSMUST00000190496 1395 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 AC154527.2-201ENSMUST00000225256 1466 ntBASIC16.67■□□□□ 0.26
Col11a1Q61245 Jakmip1-212ENSMUST00000174629 1941 ntTSL 5 BASIC16.67■□□□□ 0.26
Col11a1Q61245 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Gm10435-202ENSMUST00000162526 2878 ntTSL 5 BASIC16.67■□□□□ 0.26
Col11a1Q61245 Slc2a6-202ENSMUST00000102890 1887 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Nfkbie-201ENSMUST00000024742 2422 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Mbp-204ENSMUST00000080658 2063 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Ercc6l2-203ENSMUST00000067821 2743 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Cdadc1-201ENSMUST00000022555 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Rrnad1-206ENSMUST00000160074 1620 ntTSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Oas1b-201ENSMUST00000086377 1832 ntTSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Zfp367-202ENSMUST00000117241 2753 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Hus1b-201ENSMUST00000102943 1187 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Htr2c-203ENSMUST00000112831 809 ntTSL 3 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Simc1-201ENSMUST00000118072 2116 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Mrps10-202ENSMUST00000119841 1113 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Nfu1-203ENSMUST00000120240 1195 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Rpl13a-201ENSMUST00000150350 1047 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Snora78-201ENSMUST00000158630 128 ntBASIC16.66■□□□□ 0.26
Col11a1Q61245 Naxd-205ENSMUST00000178721 1108 ntTSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Rnf113a1-201ENSMUST00000046433 1223 ntAPPRIS P1 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Gm9200-201ENSMUST00000118513 1354 ntBASIC16.66■□□□□ 0.26
Col11a1Q61245 Alox12-202ENSMUST00000108574 2314 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Tvp23b-201ENSMUST00000014321 1784 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Ccdc43-201ENSMUST00000092569 2366 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Osr1-201ENSMUST00000057021 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Aipl1-201ENSMUST00000048207 2309 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Gbe1-201ENSMUST00000023393 2846 ntAPPRIS ALT2 TSL 5 BASIC16.66■□□□□ 0.26
Col11a1Q61245 Pias2-202ENSMUST00000114777 4968 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Lrch3-211ENSMUST00000170899 2752 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Vdac3-201ENSMUST00000009036 1354 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Gm27892-201ENSMUST00000185017 106 ntBASIC16.66■□□□□ 0.26
Col11a1Q61245 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Ehmt2-202ENSMUST00000078061 3746 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
Col11a1Q61245 Gm17055-201ENSMUST00000166951 2232 ntTSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 Clcc1-201ENSMUST00000029483 2224 ntAPPRIS P3 TSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 Dnaaf3-201ENSMUST00000094897 2224 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Zmynd19-201ENSMUST00000028350 3903 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Eml2-203ENSMUST00000120595 2255 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Atp6v0a1-203ENSMUST00000103110 2716 ntTSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 D830030K20Rik-201ENSMUST00000112797 1695 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Pdlim2-210ENSMUST00000153735 1578 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 Krt20-201ENSMUST00000017743 1927 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Jpt1-201ENSMUST00000021083 1375 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Zdhhc4-208ENSMUST00000161915 1216 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 Gm6944-201ENSMUST00000182449 1006 ntBASIC16.65■□□□□ 0.26
Col11a1Q61245 Gm33045-202ENSMUST00000210049 975 ntTSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 AC121804.3-201ENSMUST00000223420 295 ntBASIC16.65■□□□□ 0.26
Col11a1Q61245 AC139580.1-202ENSMUST00000223574 928 ntBASIC16.65■□□□□ 0.26
Col11a1Q61245 Plpp4-201ENSMUST00000094018 1256 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Ccnh-204ENSMUST00000164127 1718 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Pqlc1-205ENSMUST00000131780 2080 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Gm5912-201ENSMUST00000122282 1438 ntBASIC16.65■□□□□ 0.26
Col11a1Q61245 Gm36065-202ENSMUST00000219654 1424 ntTSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 Kifc3-212ENSMUST00000213004 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 Cfap97-202ENSMUST00000110376 2043 ntAPPRIS ALT2 TSL 5 BASIC16.65■□□□□ 0.26
Col11a1Q61245 E230025N22Rik-201ENSMUST00000115682 2016 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
Col11a1Q61245 AI467606-201ENSMUST00000056288 1932 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.26
Col11a1Q61245 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Eogt-202ENSMUST00000113387 701 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
Col11a1Q61245 Gm42921-201ENSMUST00000196670 655 ntTSL 2 BASIC16.64■□□□□ 0.25
Col11a1Q61245 Mrps17-201ENSMUST00000042191 832 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Gm10313-201ENSMUST00000095320 1002 ntBASIC16.64■□□□□ 0.25
Col11a1Q61245 Wnt1-201ENSMUST00000023734 2378 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Gm15559-201ENSMUST00000132267 2260 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Ubap1-202ENSMUST00000108060 2514 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Gm8242-201ENSMUST00000193029 1420 ntBASIC16.64■□□□□ 0.25
Col11a1Q61245 Vgf-201ENSMUST00000041543 2553 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Rad18-202ENSMUST00000077088 2577 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Akap7-203ENSMUST00000100012 2321 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Cyp2d11-201ENSMUST00000170255 1590 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
Col11a1Q61245 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.64■□□□□ 0.25
Col11a1Q61245 Tbc1d13-201ENSMUST00000044556 3595 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
Col11a1Q61245 Klf14-201ENSMUST00000101589 3056 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
Col11a1Q61245 Dcaf17-203ENSMUST00000112159 2490 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Gm28911-201ENSMUST00000188837 117 ntBASIC16.63■□□□□ 0.25
Col11a1Q61245 Wdr45-225ENSMUST00000208443 1172 ntTSL 5 BASIC16.63■□□□□ 0.25
Col11a1Q61245 AC154846.1-201ENSMUST00000226278 862 ntBASIC16.63■□□□□ 0.25
Col11a1Q61245 AC121598.1-201ENSMUST00000228224 1019 ntBASIC16.63■□□□□ 0.25
Col11a1Q61245 Ube2i-201ENSMUST00000049911 1138 ntAPPRIS P1 TSL 3 BASIC16.63■□□□□ 0.25
Col11a1Q61245 Gm10371-201ENSMUST00000127429 1411 ntTSL 2 BASIC16.63■□□□□ 0.25
Col11a1Q61245 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Disc1-205ENSMUST00000117658 2671 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Rabl6-201ENSMUST00000058137 3230 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Col11a1Q61245 Rerg-202ENSMUST00000117919 2262 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
Retrieved 100 of 76,532 protein–RNA pairs in 41.2 ms