Protein–RNA interactions for Protein: Q3UH68

Limch1, LIM and calponin homology domains-containing protein 1, mousemouse

Predictions only

Length 1,057 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Limch1Q3UH68 Dhx33-202ENSMUST00000108527 5184 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Hnf4a-201ENSMUST00000018094 4356 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 A230087F16Rik-202ENSMUST00000181561 1303 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Tesk2-203ENSMUST00000106459 2444 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Tcf3-206ENSMUST00000105342 2928 ntAPPRIS ALT2 TSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Rab10os-206ENSMUST00000179908 746 ntTSL 5 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Ighv1-15-201ENSMUST00000192077 351 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Gm31545-201ENSMUST00000209358 1219 ntTSL 5 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Ncf1-205ENSMUST00000144086 2882 ntTSL 2 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Hdgfl1-201ENSMUST00000055915 1993 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Vps37c-201ENSMUST00000087951 2415 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
Limch1Q3UH68 Cry1-201ENSMUST00000020227 3026 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Limch1Q3UH68 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC17.77■□□□□ 0.44
Limch1Q3UH68 Tox2-202ENSMUST00000109428 2947 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.44
Limch1Q3UH68 1700052K11Rik-201ENSMUST00000190120 3708 ntBASIC17.77■□□□□ 0.44
Limch1Q3UH68 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.77■□□□□ 0.44
Limch1Q3UH68 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
Limch1Q3UH68 Gjb1-203ENSMUST00000119190 1585 ntAPPRIS P1 TSL 2 BASIC17.77■□□□□ 0.44
Limch1Q3UH68 Akirin1-201ENSMUST00000102636 3052 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
Limch1Q3UH68 Synrg-201ENSMUST00000049714 3995 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Limch1Q3UH68 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC17.77■□□□□ 0.43
Limch1Q3UH68 Ccdc154-202ENSMUST00000182292 1989 ntAPPRIS ALT2 TSL 5 BASIC17.77■□□□□ 0.43
Limch1Q3UH68 Zfr2-201ENSMUST00000117798 3349 ntAPPRIS P1 TSL 5 BASIC17.77■□□□□ 0.43
Limch1Q3UH68 Lingo3-201ENSMUST00000053986 3439 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Atp11b-201ENSMUST00000029257 4868 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Echdc2-201ENSMUST00000052999 1307 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Adarb1-202ENSMUST00000098374 6584 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Klhl42-201ENSMUST00000036003 6267 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Ndst2-202ENSMUST00000223679 3907 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Ubash3b-201ENSMUST00000044155 6354 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Gpr37l1-201ENSMUST00000027682 2269 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Gdap1l1-203ENSMUST00000109421 1206 ntAPPRIS ALT1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Fhad1os2-201ENSMUST00000152351 945 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Gm30437-201ENSMUST00000206086 1201 ntBASIC17.76■□□□□ 0.43
Limch1Q3UH68 Scamp5-203ENSMUST00000214256 1025 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Epc1-202ENSMUST00000050542 565 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Med25-210ENSMUST00000208253 3693 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Ydjc-203ENSMUST00000115706 3097 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Trp53rkb-203ENSMUST00000151826 4426 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Rnps1-203ENSMUST00000163717 1920 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
Limch1Q3UH68 Tfdp2-201ENSMUST00000034982 7354 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Cep63-201ENSMUST00000093791 2696 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Alpl-201ENSMUST00000030551 2522 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Nkx3-1-201ENSMUST00000022646 3195 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Acd-201ENSMUST00000042608 3154 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Zfp786-201ENSMUST00000058844 3191 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gmpr2-201ENSMUST00000002397 1993 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 St7l-211ENSMUST00000200132 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Pptc7-202ENSMUST00000119015 2233 ntAPPRIS ALT2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Nodal-201ENSMUST00000049339 2095 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gm26578-201ENSMUST00000181702 4611 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Fam161a-205ENSMUST00000172602 1935 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gm11764-201ENSMUST00000120221 623 ntBASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gm15598-201ENSMUST00000156965 763 ntTSL 5 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Batf-201ENSMUST00000040536 955 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Tsfm-201ENSMUST00000040560 1206 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gm10175-201ENSMUST00000086013 645 ntBASIC17.75■□□□□ 0.43
Limch1Q3UH68 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Tfeb-201ENSMUST00000024786 2296 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Tor1aip2-205ENSMUST00000111757 6118 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 P2rx6-203ENSMUST00000171002 1353 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Nxnl1-202ENSMUST00000163659 2730 ntAPPRIS P1 TSL 2 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Aldh1a3-203ENSMUST00000174209 1496 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC17.75■□□□□ 0.43
Limch1Q3UH68 AC157650.3-201ENSMUST00000225058 1476 ntBASIC17.75■□□□□ 0.43
Limch1Q3UH68 Zscan2-201ENSMUST00000044115 2310 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Rufy3-205ENSMUST00000198965 3536 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
Limch1Q3UH68 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Lrrc56-201ENSMUST00000047093 2197 ntAPPRIS P3 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Grm6-204ENSMUST00000171427 4330 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Sybu-201ENSMUST00000090057 3230 ntAPPRIS P4 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Gmppa-201ENSMUST00000037796 1539 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Phf8-204ENSMUST00000112666 2556 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Narfl-201ENSMUST00000002350 2555 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Pcp2-205ENSMUST00000142431 524 ntTSL 2 BASIC17.74■□□□□ 0.43
Limch1Q3UH68 Gm25911-201ENSMUST00000157621 56 ntBASIC17.74■□□□□ 0.43
Retrieved 100 of 76,532 protein–RNA pairs in 44 ms