Protein–RNA interactions for Protein: Q00780

Col8a1, Collagen alpha-1(VIII) chain, mousemouse

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col8a1Q00780 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC12.88□□□□□ -0.35
Col8a1Q00780 AC124751.1-201ENSMUST00000222716 1408 ntBASIC12.88□□□□□ -0.35
Col8a1Q00780 Rap1gap-202ENSMUST00000097837 3168 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Crtc3-201ENSMUST00000122255 5115 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Plxnb1-201ENSMUST00000072093 8649 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Inpp5e-202ENSMUST00000114090 2790 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Ifnar1-202ENSMUST00000117748 2771 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Traf2-202ENSMUST00000114234 2151 ntAPPRIS ALT2 TSL 5 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Jade1-203ENSMUST00000168086 4790 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Zyx-205ENSMUST00000203401 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Arhgef10l-203ENSMUST00000097820 4382 ntAPPRIS ALT2 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Bend6-204ENSMUST00000129464 1750 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Gm26526-201ENSMUST00000181075 2927 ntTSL 5 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Tef-201ENSMUST00000023024 4079 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Sebox-201ENSMUST00000001130 1351 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Gm11555-202ENSMUST00000104929 638 ntAPPRIS P1 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Mrpl53-201ENSMUST00000113938 695 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Rhox2h-201ENSMUST00000115162 779 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Ntan1-202ENSMUST00000115805 984 ntTSL 3 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Gm6973-201ENSMUST00000117080 721 ntBASIC12.87□□□□□ -0.35
Col8a1Q00780 Tpm3-203ENSMUST00000119158 1090 ntTSL 3 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Tpd52-206ENSMUST00000121038 849 ntTSL 5 BASIC12.87□□□□□ -0.35
Col8a1Q00780 9130204K15Rik-201ENSMUST00000131441 867 ntTSL 5 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Glt28d2-201ENSMUST00000033643 2732 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Psip1-201ENSMUST00000030207 3251 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Aim2-204ENSMUST00000166137 2079 ntAPPRIS P1 TSL 5 BASIC12.87□□□□□ -0.35
Col8a1Q00780 Tmem26-201ENSMUST00000080995 5048 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Cul1-201ENSMUST00000031697 3161 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Ppp2r2a-204ENSMUST00000225380 1988 ntBASIC12.87□□□□□ -0.35
Col8a1Q00780 Nipal2-201ENSMUST00000040791 4331 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 Rbm15-201ENSMUST00000061772 4343 ntAPPRIS P1 TSL 1 (best) BASIC12.87□□□□□ -0.35
Col8a1Q00780 AC025913.2-201ENSMUST00000220136 1766 ntBASIC12.86□□□□□ -0.35
Col8a1Q00780 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 0610010F05Rik-203ENSMUST00000109532 4106 ntAPPRIS P2 TSL 5 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Lncpint-201ENSMUST00000115107 1676 ntTSL 5 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Mdm1-204ENSMUST00000169817 2022 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Prkar2b-202ENSMUST00000036497 3378 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Reps2-202ENSMUST00000112334 7675 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Grm4-201ENSMUST00000118161 4537 ntAPPRIS P1 TSL 5 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Tbc1d2-202ENSMUST00000107750 1941 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Dclk1-211ENSMUST00000199169 1499 ntTSL 2 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Arl4c-202ENSMUST00000159814 3997 ntAPPRIS P1 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Kctd9-205ENSMUST00000152243 2528 ntTSL 2 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Hmgb3-204ENSMUST00000114582 1743 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Hmgb3-203ENSMUST00000088874 1728 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Tcf3-203ENSMUST00000105339 2096 ntAPPRIS ALT2 TSL 5 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Rpl39-201ENSMUST00000115231 612 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Gm13383-201ENSMUST00000131190 1171 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Rpl32-202ENSMUST00000203816 906 ntAPPRIS P1 TSL 2 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Tspan32-211ENSMUST00000207211 1220 ntTSL 5 BASIC12.86□□□□□ -0.35
Col8a1Q00780 Pomc-201ENSMUST00000020990 1031 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 1700128F08Rik-202ENSMUST00000213708 717 ntBASIC12.86□□□□□ -0.35
Col8a1Q00780 Lce1g-201ENSMUST00000029527 925 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Cfd-201ENSMUST00000061653 922 ntAPPRIS P2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Kif1c-201ENSMUST00000072187 5046 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Nox4-202ENSMUST00000068829 1861 ntAPPRIS ALT2 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Efnb3-201ENSMUST00000004036 3183 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Ankrd29-201ENSMUST00000118525 3242 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 F830208F22Rik-202ENSMUST00000143732 2891 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Hebp2-201ENSMUST00000020000 2535 ntAPPRIS P1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Carmil2-201ENSMUST00000062574 2526 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Gm15163-201ENSMUST00000120749 1302 ntBASIC12.86□□□□□ -0.35
Col8a1Q00780 Brsk2-202ENSMUST00000075528 2160 ntTSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Fbxo9-202ENSMUST00000085311 2155 ntAPPRIS ALT1 TSL 1 (best) BASIC12.86□□□□□ -0.35
Col8a1Q00780 Hps6-201ENSMUST00000099393 2696 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC12.85□□□□□ -0.35
Col8a1Q00780 R3hcc1-201ENSMUST00000118374 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Ptprn-201ENSMUST00000027404 3554 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Traf5-201ENSMUST00000085573 1964 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Grwd1-201ENSMUST00000107723 1898 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Krt28-201ENSMUST00000006963 1624 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Prkab2-201ENSMUST00000045743 5006 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Dip2b-202ENSMUST00000100203 8914 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Fam171a1-203ENSMUST00000091505 3449 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Pex1-202ENSMUST00000121291 4555 ntAPPRIS ALT2 TSL 5 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Park7-204ENSMUST00000105675 882 ntAPPRIS P1 TSL 5 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Mrps18c-201ENSMUST00000016977 638 ntAPPRIS P2 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Gm15494-202ENSMUST00000171665 451 ntTSL 2 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Slc10a7-204ENSMUST00000209992 939 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Msgn1-201ENSMUST00000049877 613 ntAPPRIS P1 BASIC12.85□□□□□ -0.35
Col8a1Q00780 Shh-201ENSMUST00000002708 2847 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Rfx5-202ENSMUST00000107253 4367 ntTSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Dpp7-201ENSMUST00000028332 1682 ntAPPRIS P1 TSL 1 (best) BASIC12.85□□□□□ -0.35
Col8a1Q00780 Arid3c-201ENSMUST00000084698 1417 ntAPPRIS P3 TSL 1 (best) BASIC12.85□□□□□ -0.35
Retrieved 100 of 76,532 protein–RNA pairs in 23.5 ms