Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Cd3g-201ENSMUST00000002101 1023 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Ndufs6-204ENSMUST00000223293 757 ntTSL 2 BASIC13.05□□□□□ -0.32
Nkx3-1P97436 D930028M14Rik-201ENSMUST00000098678 1003 ntTSL 2 BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Rfx5-201ENSMUST00000029772 4189 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gpc5-202ENSMUST00000175665 2187 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gch1-201ENSMUST00000089959 2775 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Sh3bgr-201ENSMUST00000048770 1321 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Trnt1-201ENSMUST00000057578 2283 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm45277-201ENSMUST00000210549 1695 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Nr1i3-203ENSMUST00000111328 1359 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Irgc1-201ENSMUST00000080594 1737 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 4933436I20Rik-201ENSMUST00000189405 1434 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 9530082P21Rik-202ENSMUST00000181291 1798 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Tspan32-204ENSMUST00000105923 1499 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Fgf15-201ENSMUST00000033389 1810 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Nadk-203ENSMUST00000105613 3152 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Krt90-201ENSMUST00000023714 2534 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Nrsn1-204ENSMUST00000167305 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Esr1-203ENSMUST00000105589 2612 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Map1s-201ENSMUST00000019405 3314 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Atp1a1-201ENSMUST00000036493 3679 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Gm19684-201ENSMUST00000173128 1611 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Chgb-201ENSMUST00000028826 2740 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Gm13306-202ENSMUST00000108018 542 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Eef1akmt4-201ENSMUST00000115522 1130 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 1700045H11Rik-201ENSMUST00000128056 593 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Haghl-207ENSMUST00000140738 1194 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Crem-221ENSMUST00000142690 1256 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 4930544D05Rik-203ENSMUST00000144960 624 ntAPPRIS P2 TSL 5 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Hoga1-204ENSMUST00000172244 631 ntTSL 5 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 AA465934-202ENSMUST00000176545 356 ntTSL 2 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 AC131710.1-201ENSMUST00000228336 990 ntBASIC13.04□□□□□ -0.32
Nkx3-1P97436 Hcrt-201ENSMUST00000055083 586 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Rtl8c-201ENSMUST00000063384 401 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Gm11937-201ENSMUST00000076478 396 ntAPPRIS P1 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Nkx2-1-201ENSMUST00000001536 2809 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Ppp1r1a-201ENSMUST00000023133 1306 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Dera-201ENSMUST00000087675 1729 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Wnt5b-202ENSMUST00000118120 2115 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Fars2-201ENSMUST00000021857 2125 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Fam208b-201ENSMUST00000096069 8338 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Kcnh1-202ENSMUST00000110844 7161 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Mapk7-201ENSMUST00000079080 3019 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Ntrk2-205ENSMUST00000224402 2284 ntBASIC13.04□□□□□ -0.32
Nkx3-1P97436 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC13.04□□□□□ -0.32
Nkx3-1P97436 Mta1-203ENSMUST00000109723 2790 ntAPPRIS ALT2 TSL 5 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Mta1-204ENSMUST00000109726 2775 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Mta1-205ENSMUST00000109727 2789 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 E330009J07Rik-202ENSMUST00000101492 6742 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Jakmip1-202ENSMUST00000121010 2496 ntTSL 5 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Mkrn3-201ENSMUST00000094340 2547 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Pnkp-203ENSMUST00000107876 1770 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Gm20661-203ENSMUST00000177368 900 ntAPPRIS P1 TSL 2 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Gm34964-201ENSMUST00000207398 417 ntTSL 5 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Tex12-201ENSMUST00000034568 895 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 1700018B24Rik-201ENSMUST00000036023 593 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Cyhr1-201ENSMUST00000066677 1163 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Atad3aos-201ENSMUST00000067628 971 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Olfr1410-201ENSMUST00000079790 969 ntTSL 5 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 G430095P16Rik-201ENSMUST00000098571 721 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Aaed1-202ENSMUST00000220895 2858 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 March2-201ENSMUST00000066121 3400 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 1190002N15Rik-201ENSMUST00000113028 3950 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Zpbp-201ENSMUST00000020413 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Hsd17b14-201ENSMUST00000107752 1400 ntAPPRIS P1 TSL 5 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC13.03□□□□□ -0.32
Nkx3-1P97436 1700034J05Rik-202ENSMUST00000111622 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 2810410L24Rik-202ENSMUST00000155681 2615 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Dnah9-202ENSMUST00000108691 2671 ntTSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Sh2b1-202ENSMUST00000205340 3366 ntAPPRIS ALT2 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Wnt5b-201ENSMUST00000117171 2174 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.03□□□□□ -0.32
Nkx3-1P97436 Apba3-211ENSMUST00000220297 2268 ntAPPRIS P1 TSL 5 BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Rgl1-202ENSMUST00000111857 3037 ntTSL 5 BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Trim7-202ENSMUST00000109213 2356 ntTSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Fbxo41-201ENSMUST00000159062 6505 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Rtp2-201ENSMUST00000061030 2421 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Ehmt2-204ENSMUST00000114033 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Piezo1-209ENSMUST00000156333 8219 ntAPPRIS ALT2 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Piezo1-201ENSMUST00000067252 8216 ntAPPRIS P2 TSL 5 BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Hsdl2-201ENSMUST00000030078 2611 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Golt1a-201ENSMUST00000094557 1865 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Pnpo-201ENSMUST00000018803 1994 ntAPPRIS P1 TSL 1 (best) BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Camk2b-205ENSMUST00000093355 1973 ntTSL 5 BASIC13.02□□□□□ -0.32
Nkx3-1P97436 Fem1a-201ENSMUST00000060253 6816 ntAPPRIS P1 BASIC13.02□□□□□ -0.33
Retrieved 100 of 76,532 protein–RNA pairs in 30.6 ms