Protein–RNA interactions for Protein: P49135

Ercc3, General transcription and DNA repair factor IIH helicase subunit XPB, mousemouse

Predictions only

Length 783 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ercc3P49135 Tfap2a-203ENSMUST00000223869 2037 ntBASIC17.94■□□□□ 0.46
Ercc3P49135 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.94■□□□□ 0.46
Ercc3P49135 Gm13294-201ENSMUST00000121757 1330 ntBASIC17.94■□□□□ 0.46
Ercc3P49135 Nsmce3-201ENSMUST00000094331 5946 ntAPPRIS P1 BASIC17.94■□□□□ 0.46
Ercc3P49135 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Fgfr1op2-204ENSMUST00000111663 2880 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Gm2788-204ENSMUST00000209288 1966 ntTSL 5 BASIC17.93■□□□□ 0.46
Ercc3P49135 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Hoxb8-201ENSMUST00000052650 2635 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Nes-203ENSMUST00000160694 5958 ntAPPRIS ALT2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Trim62-201ENSMUST00000035667 3752 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Dcaf13-201ENSMUST00000022909 1551 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Krt16-201ENSMUST00000007280 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Tpbg-201ENSMUST00000006559 3603 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Megf11-210ENSMUST00000164113 6018 ntTSL 5 BASIC17.93■□□□□ 0.46
Ercc3P49135 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Gprin1-201ENSMUST00000099506 4141 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Slc30a5-201ENSMUST00000067246 3179 ntAPPRIS P2 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Thap7-201ENSMUST00000100125 1248 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Cpt2-203ENSMUST00000106720 1015 ntTSL 2 BASIC17.93■□□□□ 0.46
Ercc3P49135 Epo-202ENSMUST00000111038 855 ntAPPRIS P3 TSL 5 BASIC17.93■□□□□ 0.46
Ercc3P49135 Izumo1r-203ENSMUST00000117620 1095 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Gm32031-203ENSMUST00000208993 649 ntTSL 2 BASIC17.93■□□□□ 0.46
Ercc3P49135 Vsig2-206ENSMUST00000215957 851 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Ly6d-201ENSMUST00000040404 744 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC17.93■□□□□ 0.46
Ercc3P49135 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Mcm9-201ENSMUST00000075540 4882 ntAPPRIS P1 TSL 2 BASIC17.93■□□□□ 0.46
Ercc3P49135 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Palm3-201ENSMUST00000055077 2452 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Ncmap-204ENSMUST00000105859 1801 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Acat2-203ENSMUST00000159697 1800 ntTSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Rab10-201ENSMUST00000021001 3513 ntAPPRIS P1 TSL 1 (best) BASIC17.93■□□□□ 0.46
Ercc3P49135 Gm29361-201ENSMUST00000183323 2000 ntBASIC17.93■□□□□ 0.46
Ercc3P49135 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Adora2a-201ENSMUST00000105420 2596 ntAPPRIS P1 TSL 3 BASIC17.92■□□□□ 0.46
Ercc3P49135 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Tmem88-201ENSMUST00000050140 1582 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Tmem5-205ENSMUST00000140299 4793 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Lman2l-204ENSMUST00000125304 3378 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Trim65-201ENSMUST00000067632 3048 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Cdon-202ENSMUST00000119129 7503 ntAPPRIS P1 TSL 5 BASIC17.92■□□□□ 0.46
Ercc3P49135 Rflna-203ENSMUST00000197746 1649 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 0610010K14Rik-204ENSMUST00000102569 778 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC17.92■□□□□ 0.46
Ercc3P49135 Gm16156-201ENSMUST00000141168 713 ntTSL 3 BASIC17.92■□□□□ 0.46
Ercc3P49135 Psmb1-201ENSMUST00000014913 1036 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Tma7-203ENSMUST00000192801 386 ntTSL 3 BASIC17.92■□□□□ 0.46
Ercc3P49135 Myh14-204ENSMUST00000207775 6499 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Ercc3P49135 Mael-202ENSMUST00000194057 1691 ntTSL 5 BASIC17.92■□□□□ 0.46
Ercc3P49135 4921539H07Rik-202ENSMUST00000200072 1665 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Cnot7-206ENSMUST00000135269 2461 ntTSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Kcnn1-201ENSMUST00000110078 4047 ntAPPRIS P2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Kcnn1-202ENSMUST00000110081 4045 ntAPPRIS ALT2 TSL 5 BASIC17.92■□□□□ 0.46
Ercc3P49135 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Xpo6-201ENSMUST00000009344 4455 ntAPPRIS P3 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Mllt10-204ENSMUST00000114680 3543 ntAPPRIS P1 TSL 1 (best) BASIC17.92■□□□□ 0.46
Ercc3P49135 Gm34419-201ENSMUST00000211383 1387 ntTSL 5 BASIC17.91■□□□□ 0.46
Ercc3P49135 Vrk3-201ENSMUST00000002275 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Mapk8ip2-201ENSMUST00000023291 5558 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Rbfox3-203ENSMUST00000103023 2809 ntAPPRIS ALT2 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Zkscan3-203ENSMUST00000116434 2600 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.91■□□□□ 0.46
Ercc3P49135 Add1-203ENSMUST00000114335 4547 ntTSL 5 BASIC17.91■□□□□ 0.46
Ercc3P49135 Hoga1-201ENSMUST00000081714 1668 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Meig1-203ENSMUST00000115082 603 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Gm15467-201ENSMUST00000120582 445 ntBASIC17.91■□□□□ 0.46
Ercc3P49135 Gm8000-201ENSMUST00000188378 592 ntBASIC17.91■□□□□ 0.46
Ercc3P49135 Gm44945-201ENSMUST00000206764 1187 ntBASIC17.91■□□□□ 0.46
Ercc3P49135 1700037H04Rik-201ENSMUST00000028800 832 ntAPPRIS ALT1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Gm5867-201ENSMUST00000063197 592 ntBASIC17.91■□□□□ 0.46
Ercc3P49135 Cdpf1-201ENSMUST00000071876 997 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Klhl34-201ENSMUST00000087157 1935 ntAPPRIS P1 BASIC17.91■□□□□ 0.46
Ercc3P49135 Gm5366-201ENSMUST00000215494 1338 ntBASIC17.91■□□□□ 0.46
Ercc3P49135 Tbx3os1-206ENSMUST00000202307 1787 ntTSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Syne4-201ENSMUST00000054594 1355 ntAPPRIS P3 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Rab22a-201ENSMUST00000029024 7155 ntAPPRIS P1 TSL 1 (best) BASIC17.91■□□□□ 0.46
Ercc3P49135 Tnfaip8l1-201ENSMUST00000077788 2379 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Gm8281-202ENSMUST00000163719 1954 ntAPPRIS P1 TSL 5 BASIC17.9■□□□□ 0.46
Ercc3P49135 Kdf1-203ENSMUST00000121797 2256 ntAPPRIS ALT2 TSL 2 BASIC17.9■□□□□ 0.46
Ercc3P49135 Papd5-202ENSMUST00000118952 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 A930006K02Rik-201ENSMUST00000149172 776 ntTSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Ucn-202ENSMUST00000201184 499 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Bloc1s5-203ENSMUST00000224902 612 ntBASIC17.9■□□□□ 0.46
Ercc3P49135 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 1700080E11Rik-201ENSMUST00000035180 883 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Tbcc-201ENSMUST00000040434 1164 ntAPPRIS P1 BASIC17.9■□□□□ 0.46
Ercc3P49135 Lamtor4-201ENSMUST00000062067 877 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Sesn1-202ENSMUST00000099931 3809 ntAPPRIS ALT1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Ercc3P49135 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC17.9■□□□□ 0.46
Ercc3P49135 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC17.9■□□□□ 0.46
Retrieved 100 of 76,532 protein–RNA pairs in 26.6 ms