Protein–RNA interactions for Protein: P48377

Rfx1, MHC class II regulatory factor RFX1, mousemouse

Predictions only

Length 963 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Rfx1P48377 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Tubgcp4-215ENSMUST00000186659 2915 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Gm9856-201ENSMUST00000217077 2578 ntBASIC18.09■□□□□ 0.49
Rfx1P48377 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Gm14722-201ENSMUST00000118943 689 ntBASIC18.09■□□□□ 0.49
Rfx1P48377 Gm29518-201ENSMUST00000190858 372 ntBASIC18.09■□□□□ 0.49
Rfx1P48377 C1qbp-201ENSMUST00000078528 1175 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Smo-201ENSMUST00000001812 3779 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Rnaseh2a-203ENSMUST00000109738 2044 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Gtdc1-202ENSMUST00000100127 2422 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
Rfx1P48377 Cep170b-203ENSMUST00000179041 6565 ntAPPRIS P1 TSL 5 BASIC18.09■□□□□ 0.49
Rfx1P48377 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC18.09■□□□□ 0.49
Rfx1P48377 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.49
Rfx1P48377 Ube2o-201ENSMUST00000082152 5205 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx1P48377 Tjp2-201ENSMUST00000099558 4591 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx1P48377 Fbxl19-203ENSMUST00000186207 3178 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx1P48377 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.49
Rfx1P48377 Rcbtb1-202ENSMUST00000043227 3903 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx1P48377 Snrpf-201ENSMUST00000020203 861 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx1P48377 Col4a2-201ENSMUST00000033899 6450 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx1P48377 Gm42632-201ENSMUST00000201707 2411 ntBASIC18.08■□□□□ 0.48
Rfx1P48377 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx1P48377 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx1P48377 Wwp2-205ENSMUST00000212543 1996 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
Rfx1P48377 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Rassf10-201ENSMUST00000182858 3496 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Rfx1P48377 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Slc46a3-202ENSMUST00000118527 2210 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Nrcam-202ENSMUST00000110748 6275 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Glb1-201ENSMUST00000063042 2396 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Gm20878-202ENSMUST00000108028 339 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Gm15510-201ENSMUST00000123644 1172 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Gm15246-201ENSMUST00000149873 540 ntTSL 3 BASIC18.07■□□□□ 0.48
Rfx1P48377 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC18.07■□□□□ 0.48
Rfx1P48377 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Purg-201ENSMUST00000070340 1064 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Rfx1P48377 Olfr1411-201ENSMUST00000073748 972 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
Rfx1P48377 Ahctf1-201ENSMUST00000027768 8506 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Nfasc-208ENSMUST00000188307 3049 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Chdh-201ENSMUST00000067620 5690 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Smim1-201ENSMUST00000125533 2568 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Gm7609-201ENSMUST00000113402 1538 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Ftsj1-202ENSMUST00000115594 1529 ntTSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Necab3-201ENSMUST00000000895 1829 ntAPPRIS P2 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Sema4b-204ENSMUST00000205822 3760 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
Rfx1P48377 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Cacna1g-201ENSMUST00000021234 8139 ntAPPRIS ALT2 TSL 5 BASIC18.07■□□□□ 0.48
Rfx1P48377 Nup88-202ENSMUST00000108530 2389 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Fam169b-206ENSMUST00000210558 2815 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Rfx1P48377 Ankrd16-201ENSMUST00000056108 1618 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
Rfx1P48377 Islr2-210ENSMUST00000215950 4109 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Pdxdc1-203ENSMUST00000115803 1268 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
Rfx1P48377 Gm10830-201ENSMUST00000186379 636 ntTSL 5 BASIC18.06■□□□□ 0.48
Rfx1P48377 Gm44965-201ENSMUST00000204121 360 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
Rfx1P48377 Wdr74-202ENSMUST00000210512 1078 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Psmd8-203ENSMUST00000186182 1512 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Ccdc117-201ENSMUST00000020776 3372 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Il11ra1-201ENSMUST00000098132 2009 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
Rfx1P48377 Pla2g2c-201ENSMUST00000030530 1618 ntAPPRIS P1 TSL 3 BASIC18.05■□□□□ 0.48
Rfx1P48377 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Trmt6-201ENSMUST00000039554 2828 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Gal3st4-202ENSMUST00000161279 2059 ntAPPRIS P3 TSL 3 BASIC18.05■□□□□ 0.48
Rfx1P48377 Chtf18-201ENSMUST00000048054 3214 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Dnmt3b-201ENSMUST00000056495 4318 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Rfx1P48377 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Olfr129-201ENSMUST00000122318 993 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Gssos2-201ENSMUST00000130859 727 ntTSL 3 BASIC18.05■□□□□ 0.48
Rfx1P48377 Gm10231-201ENSMUST00000181584 441 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Sbsn-202ENSMUST00000182227 432 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
Rfx1P48377 Sbsn-203ENSMUST00000182229 732 ntAPPRIS ALT2 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Gm7286-201ENSMUST00000182691 1007 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Entpd4-205ENSMUST00000184314 989 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Atp5g2-202ENSMUST00000185641 731 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Eloc-203ENSMUST00000185771 742 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
Rfx1P48377 Rwdd1-201ENSMUST00000019917 1090 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Gm10175-202ENSMUST00000208752 441 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Gm19164-201ENSMUST00000210667 640 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Shc3-203ENSMUST00000223543 1241 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Entpd4b-201ENSMUST00000064846 989 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Atp5g2-201ENSMUST00000075630 441 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Fthl17f-201ENSMUST00000097029 847 ntAPPRIS P1 BASIC18.05■□□□□ 0.48
Rfx1P48377 Gm44291-201ENSMUST00000203102 2865 ntBASIC18.05■□□□□ 0.48
Rfx1P48377 Lrp4-201ENSMUST00000028689 7926 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Rfx1P48377 Pgbd5-201ENSMUST00000052580 2824 ntAPPRIS P2 TSL 5 BASIC18.05■□□□□ 0.48
Rfx1P48377 Ppard-201ENSMUST00000002320 3218 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 76,532 protein–RNA pairs in 37.7 ms