Protein–RNA interactions for Protein: P18828

Sdc1, Syndecan-1, mousemouse

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Sdc1P18828 Gm26513-201ENSMUST00000181802 2489 ntBASIC12.44□□□□□ -0.42
Sdc1P18828 Tpgs2-201ENSMUST00000115817 4159 ntAPPRIS P3 TSL 1 (best) BASIC12.44□□□□□ -0.42
Sdc1P18828 Osbpl11-201ENSMUST00000039733 4520 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Gm20460-201ENSMUST00000168709 1572 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Rcan1-201ENSMUST00000023672 2192 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Slc27a1-201ENSMUST00000034267 2795 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Noct-203ENSMUST00000167780 2992 ntAPPRIS P2 TSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Ppig-201ENSMUST00000040915 6245 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Gm7712-202ENSMUST00000222331 1510 ntBASIC12.43□□□□□ -0.42
Sdc1P18828 Rdx-202ENSMUST00000061352 1502 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Gak-201ENSMUST00000046603 4453 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Gyg-203ENSMUST00000178328 1698 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC12.43□□□□□ -0.42
Sdc1P18828 Speg-204ENSMUST00000113589 833 ntTSL 2 BASIC12.43□□□□□ -0.42
Sdc1P18828 Acaa1a-203ENSMUST00000175743 1219 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Acaa1a-207ENSMUST00000176397 996 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Gm37564-201ENSMUST00000195000 330 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Pts-208ENSMUST00000215416 439 ntTSL 2 BASIC12.43□□□□□ -0.42
Sdc1P18828 Tpsg1-201ENSMUST00000024999 1186 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 H2-Eb1-201ENSMUST00000074557 1184 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Dnajb12-205ENSMUST00000147914 3041 ntAPPRIS ALT2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Elmod1-201ENSMUST00000048409 2605 ntAPPRIS P2 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Wbp2-201ENSMUST00000074628 1826 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Spcs2-210ENSMUST00000209032 1610 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Hnrnpa2b1-201ENSMUST00000069949 1647 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Cyp2d10-201ENSMUST00000072776 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Carlr-201ENSMUST00000181515 2574 ntBASIC12.43□□□□□ -0.42
Sdc1P18828 Tpm2-201ENSMUST00000030184 2175 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Etv6-202ENSMUST00000111963 5707 ntTSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 4921514A10Rik-201ENSMUST00000181450 2114 ntTSL 5 BASIC12.43□□□□□ -0.42
Sdc1P18828 Cntfr-204ENSMUST00000102962 1926 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Cdk6-201ENSMUST00000042410 2470 ntAPPRIS P1 TSL 1 (best) BASIC12.43□□□□□ -0.42
Sdc1P18828 Gid4-201ENSMUST00000070681 4283 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Smpd3-202ENSMUST00000212896 2626 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Zbtb33-201ENSMUST00000049740 5122 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Iffo2-201ENSMUST00000040023 5227 ntAPPRIS P3 TSL 5 BASIC12.42□□□□□ -0.42
Sdc1P18828 Mpdu1-201ENSMUST00000018905 1321 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Trim27-206ENSMUST00000222544 4312 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Sdc1P18828 Pde7b-205ENSMUST00000169404 1697 ntAPPRIS ALT2 TSL 5 BASIC12.42□□□□□ -0.42
Sdc1P18828 Gm44645-201ENSMUST00000205492 1653 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Prr18-201ENSMUST00000069742 3407 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Fbxo10-201ENSMUST00000052236 4635 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Taf3-201ENSMUST00000026888 4792 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Egln3-201ENSMUST00000039516 2662 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Atp5g1-203ENSMUST00000107686 691 ntAPPRIS P1 TSL 3 BASIC12.42□□□□□ -0.42
Sdc1P18828 Gapdh-202ENSMUST00000117757 1273 ntTSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Gm13181-201ENSMUST00000120117 1069 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Phgr1-202ENSMUST00000130293 542 ntAPPRIS P2 TSL 5 BASIC12.42□□□□□ -0.42
Sdc1P18828 Gm27275-201ENSMUST00000184318 272 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Gm46218-201ENSMUST00000215448 801 ntTSL 5 BASIC12.42□□□□□ -0.42
Sdc1P18828 1110004E09Rik-201ENSMUST00000023694 1143 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Tmem239-201ENSMUST00000055421 1291 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Matn2-206ENSMUST00000228570 2798 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Nrn1-203ENSMUST00000223611 1443 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Ppil1-201ENSMUST00000024802 1434 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Marveld3-202ENSMUST00000051430 2447 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Sf3a1-201ENSMUST00000002198 4920 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Rinl-206ENSMUST00000209035 2898 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Ptp4a1-202ENSMUST00000076587 2851 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Gm42471-201ENSMUST00000201457 1865 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Ubqln2-201ENSMUST00000060714 3344 ntAPPRIS P1 BASIC12.42□□□□□ -0.42
Sdc1P18828 Hipk3-202ENSMUST00000111124 4125 ntAPPRIS P1 TSL 5 BASIC12.42□□□□□ -0.42
Sdc1P18828 Gm45003-201ENSMUST00000205875 2158 ntBASIC12.42□□□□□ -0.42
Sdc1P18828 Prr15-201ENSMUST00000059138 1511 ntAPPRIS P1 TSL 1 (best) BASIC12.42□□□□□ -0.42
Sdc1P18828 Mettl7a2-202ENSMUST00000176287 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Mettl7a2-201ENSMUST00000088142 1800 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Sp2-203ENSMUST00000107624 3055 ntAPPRIS P2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Arhgap20-201ENSMUST00000065496 7161 ntAPPRIS P2 TSL 5 BASIC12.41□□□□□ -0.42
Sdc1P18828 Gm19569-202ENSMUST00000184658 1305 ntTSL 2 BASIC12.41□□□□□ -0.42
Sdc1P18828 Galnt6-203ENSMUST00000161514 2746 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Fxyd3-205ENSMUST00000167369 2894 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Mkrn1-201ENSMUST00000031985 3046 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Ttyh2-201ENSMUST00000045779 3486 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Hells-201ENSMUST00000025965 5868 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 9330182L06Rik-202ENSMUST00000115348 3403 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Nfatc1-202ENSMUST00000078049 4607 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Gm10849-201ENSMUST00000100397 618 ntBASIC12.41□□□□□ -0.42
Sdc1P18828 Echdc2-203ENSMUST00000116307 893 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc1P18828 Gm11336-201ENSMUST00000118168 334 ntBASIC12.41□□□□□ -0.42
Sdc1P18828 Pdcd5-201ENSMUST00000118501 684 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Kcnk13-202ENSMUST00000160413 3061 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Gm17178-201ENSMUST00000163273 357 ntTSL 5 BASIC12.41□□□□□ -0.42
Sdc1P18828 A230065N10Rik-201ENSMUST00000172178 1028 ntBASIC12.41□□□□□ -0.42
Sdc1P18828 Kpna6-201ENSMUST00000003828 2195 ntAPPRIS ALT1 TSL 5 BASIC12.41□□□□□ -0.42
Sdc1P18828 Cldn24-201ENSMUST00000079639 663 ntAPPRIS P1 BASIC12.41□□□□□ -0.42
Sdc1P18828 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Peli1-201ENSMUST00000093290 3514 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Pde4a-202ENSMUST00000039413 4653 ntAPPRIS P3 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Aldh1a2-201ENSMUST00000034723 2264 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Actg1-204ENSMUST00000106215 1827 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Olfr1411-202ENSMUST00000190844 1821 ntAPPRIS P1 TSL 5 BASIC12.41□□□□□ -0.42
Sdc1P18828 Selenok-201ENSMUST00000112268 1678 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Ddx39-201ENSMUST00000019576 1656 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.42
Sdc1P18828 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC12.41□□□□□ -0.42
Retrieved 100 of 76,532 protein–RNA pairs in 28.9 ms