Protein–RNA interactions for Protein: O54879

Hmgb3, High mobility group protein B3, mousemouse

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Hmgb3O54879 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Myo18a-221ENSMUST00000167856 6132 ntTSL 5 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Cdk19-202ENSMUST00000095743 3973 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Ebf4-202ENSMUST00000110287 2580 ntAPPRIS ALT2 TSL 5 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Ptk2-202ENSMUST00000170939 3598 ntTSL 2 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Zfp664-201ENSMUST00000111417 4092 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Sall4-201ENSMUST00000029061 5073 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Ptn-201ENSMUST00000101534 1614 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Nptn-212ENSMUST00000177292 1390 ntAPPRIS P1 TSL 5 BASIC12.55□□□□□ -0.4
Hmgb3O54879 Fech-201ENSMUST00000025484 2901 ntAPPRIS P1 TSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC12.55□□□□□ -0.4
Hmgb3O54879 Fam151a-201ENSMUST00000047620 1923 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Pbx1-205ENSMUST00000176540 6876 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Cep170-205ENSMUST00000192961 2708 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Cep126-201ENSMUST00000037397 3819 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Gm2061-201ENSMUST00000180623 2761 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Gm36995-201ENSMUST00000126170 5727 ntTSL 2 BASIC12.54□□□□□ -0.4
Hmgb3O54879 CN725425-202ENSMUST00000190436 2041 ntAPPRIS P5 TSL 5 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Cpne1-203ENSMUST00000109608 3492 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Pam-201ENSMUST00000058762 4095 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Gm14453-201ENSMUST00000139677 553 ntTSL 3 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Pabpn1l-202ENSMUST00000212966 1113 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 A930018P22Rik-201ENSMUST00000040374 822 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Pdcd2-201ENSMUST00000054450 1120 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Olfr464-201ENSMUST00000074874 1084 ntAPPRIS P1 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Rpl27-201ENSMUST00000077856 614 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Gm9889-202ENSMUST00000206983 1577 ntBASIC12.54□□□□□ -0.4
Hmgb3O54879 Tlr2-201ENSMUST00000029623 3014 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Ush1g-201ENSMUST00000103037 3306 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Zfp446-204ENSMUST00000108537 2178 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Slitrk5-201ENSMUST00000042767 4831 ntAPPRIS P1 TSL 2 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Vcl-201ENSMUST00000022369 5267 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Gm5478-201ENSMUST00000100184 2566 ntAPPRIS P1 TSL 5 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Sema6d-206ENSMUST00000103239 6225 ntAPPRIS P4 TSL 5 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Trim56-201ENSMUST00000054384 9279 ntAPPRIS P1 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Phactr1-213ENSMUST00000148891 5307 ntTSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Naxd-201ENSMUST00000033901 1359 ntTSL 2 BASIC12.54□□□□□ -0.4
Hmgb3O54879 Chfr-207ENSMUST00000198633 2623 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Dnaja3-201ENSMUST00000060067 2648 ntAPPRIS P3 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Ttc16-202ENSMUST00000091059 2388 ntAPPRIS ALT2 TSL 1 (best) BASIC12.54□□□□□ -0.4
Hmgb3O54879 Ak1-203ENSMUST00000113278 2085 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Ccdc158-203ENSMUST00000150359 3353 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Ephb1-201ENSMUST00000035129 4667 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Mrps27-201ENSMUST00000052249 1849 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Prnp-201ENSMUST00000091288 2184 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Lmf1-202ENSMUST00000116641 1858 ntAPPRIS P2 TSL 5 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Lmf1-201ENSMUST00000063344 1861 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Slc52a3-203ENSMUST00000109859 2204 ntTSL 5 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Itga3-203ENSMUST00000120375 4697 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Myo5a-206ENSMUST00000136731 6480 ntAPPRIS ALT1 TSL 5 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Epb41-203ENSMUST00000084253 5141 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Naa30-201ENSMUST00000037362 4464 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Pacsin1-203ENSMUST00000114872 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Cd151-201ENSMUST00000058746 1619 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Utp3-201ENSMUST00000090413 1629 ntAPPRIS P1 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Gm14321-201ENSMUST00000127441 632 ntTSL 3 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Cox16-207ENSMUST00000169124 685 ntTSL 2 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Gm45894-201ENSMUST00000211940 651 ntTSL 2 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Cck-204ENSMUST00000216138 799 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Atp2b3-201ENSMUST00000033744 3894 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 0610005C13Rik-207ENSMUST00000210866 2434 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Amz2-202ENSMUST00000092500 2816 ntAPPRIS P2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Adam15-204ENSMUST00000107448 2893 ntAPPRIS ALT2 TSL 5 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Tmem164-202ENSMUST00000101198 4443 ntTSL 3 BASIC12.53□□□□□ -0.4
Hmgb3O54879 Prkcz-201ENSMUST00000030922 2641 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Brpf1-210ENSMUST00000204626 4381 ntAPPRIS ALT2 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Slx4-201ENSMUST00000040790 5706 ntAPPRIS P1 TSL 1 (best) BASIC12.53□□□□□ -0.4
Hmgb3O54879 Cct7-201ENSMUST00000032078 2441 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Hmgb3O54879 Gm11960-202ENSMUST00000181063 2858 ntBASIC12.52□□□□□ -0.4
Hmgb3O54879 Gm15582-201ENSMUST00000132849 1581 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Hmgb3O54879 Myef2-206ENSMUST00000142718 2942 ntAPPRIS ALT2 TSL 5 BASIC12.52□□□□□ -0.4
Hmgb3O54879 Kdm2b-201ENSMUST00000031435 3532 ntTSL 1 (best) BASIC12.52□□□□□ -0.4
Hmgb3O54879 Gm45504-201ENSMUST00000211407 2107 ntBASIC12.52□□□□□ -0.4
Hmgb3O54879 Cyfip1-201ENSMUST00000032629 6440 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.4
Hmgb3O54879 Dennd6b-201ENSMUST00000078953 4607 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Fam71a-201ENSMUST00000171798 2234 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Hmgb3O54879 Olfr317-202ENSMUST00000215513 2769 ntAPPRIS P1 TSL 5 BASIC12.52□□□□□ -0.41
Hmgb3O54879 Gusb-202ENSMUST00000111307 932 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Gm19345-201ENSMUST00000172815 993 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Snrnp48-202ENSMUST00000178564 847 ntTSL 5 BASIC12.52□□□□□ -0.41
Hmgb3O54879 Rprml-201ENSMUST00000057870 1010 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Hmgb3O54879 3110070M22Rik-201ENSMUST00000099148 1123 ntAPPRIS P1 BASIC12.52□□□□□ -0.41
Hmgb3O54879 Otud7b-201ENSMUST00000035519 8043 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Grb10-201ENSMUST00000093321 5061 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Acvrl1-204ENSMUST00000120028 1932 ntAPPRIS P1 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Parp3-203ENSMUST00000123555 2495 ntAPPRIS P3 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 Tnks1bp1-201ENSMUST00000048400 4799 ntAPPRIS ALT2 TSL 1 (best) BASIC12.52□□□□□ -0.41
Hmgb3O54879 E030042O20Rik-201ENSMUST00000135244 1427 ntTSL 1 (best) BASIC12.52□□□□□ -0.41
Retrieved 100 of 76,532 protein–RNA pairs in 93.4 ms