Protein–RNA interactions for Protein: Q9CQ56

Use1, Vesicle transport protein USE1, mousemouse

Predictions only

Length 270 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Use1Q9CQ56 Casp6-201ENSMUST00000029626 1456 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Camta1-211ENSMUST00000169423 5208 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Thap3-202ENSMUST00000105665 832 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Rps15-ps2-201ENSMUST00000121788 438 ntBASIC14.33□□□□□ -0.12
Use1Q9CQ56 Snhg10-202ENSMUST00000222812 527 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Nthl1-201ENSMUST00000047611 1080 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Lce1a1-201ENSMUST00000074142 705 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Hacd1-201ENSMUST00000074854 926 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Zfp524-201ENSMUST00000086349 1142 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 S100a16-202ENSMUST00000098911 1127 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Tmc8-203ENSMUST00000117781 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Tmem161a-214ENSMUST00000182980 2080 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Wtap-201ENSMUST00000007007 2051 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Oas1b-203ENSMUST00000183291 1837 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Sox13-201ENSMUST00000094551 1842 ntAPPRIS P2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Erp29-203ENSMUST00000130451 5204 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Gm10505-201ENSMUST00000151398 1587 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Gm39027-201ENSMUST00000208560 2942 ntTSL 5 BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Sigirr-206ENSMUST00000210167 1897 ntAPPRIS ALT2 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Dnajc9-201ENSMUST00000022345 1631 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Gm5837-201ENSMUST00000191844 1369 ntBASIC14.33□□□□□ -0.12
Use1Q9CQ56 Ch25h-201ENSMUST00000050562 1350 ntAPPRIS P1 BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Trim3-201ENSMUST00000057525 3016 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Cds1-201ENSMUST00000031273 3924 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Pde4dip-201ENSMUST00000045243 6185 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Use1Q9CQ56 Gm9768-201ENSMUST00000206007 2861 ntBASIC14.32□□□□□ -0.12
Use1Q9CQ56 Atp2a3-207ENSMUST00000163326 4606 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Scube1-205ENSMUST00000171496 7824 ntAPPRIS P3 TSL 5 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Fstl1-201ENSMUST00000114763 3789 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Btd-201ENSMUST00000090147 2324 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Loxl4-203ENSMUST00000164786 2617 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Gm10676-201ENSMUST00000098778 3221 ntBASIC14.32□□□□□ -0.12
Use1Q9CQ56 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Acot10-201ENSMUST00000052910 1537 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Pqlc2-201ENSMUST00000053862 1532 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Wnk1-223ENSMUST00000177761 11303 ntAPPRIS ALT2 TSL 5 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Ncf1-201ENSMUST00000016094 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 4933435F18Rik-202ENSMUST00000154878 2174 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Chst10-205ENSMUST00000193441 4999 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Aqp5-202ENSMUST00000169082 1551 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Traf7-210ENSMUST00000176353 2503 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Las1l-201ENSMUST00000079987 2530 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Tpm2-203ENSMUST00000107914 1164 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 H13-203ENSMUST00000109825 1063 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Mpz-202ENSMUST00000111334 1278 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Fam3a-203ENSMUST00000114139 931 ntTSL 5 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Vsig2-201ENSMUST00000002008 1166 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 D530033B14Rik-201ENSMUST00000205412 546 ntTSL 5 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Gm44973-201ENSMUST00000207050 1003 ntAPPRIS P1 TSL 3 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Gm8655-201ENSMUST00000221159 852 ntBASIC14.32□□□□□ -0.12
Use1Q9CQ56 AC171004.1-201ENSMUST00000221723 664 ntTSL 3 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Ube2t-201ENSMUST00000027687 1116 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Prss40-201ENSMUST00000047840 1275 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Gpank1-201ENSMUST00000052167 1295 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Sult2b1-201ENSMUST00000075571 1193 ntAPPRIS P2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Gm5357-201ENSMUST00000212720 1924 ntBASIC14.32□□□□□ -0.12
Use1Q9CQ56 Bicc1-201ENSMUST00000014473 3231 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Snai1-201ENSMUST00000052631 1621 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Map6d1-201ENSMUST00000040880 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Rgs6-208ENSMUST00000186458 5588 ntAPPRIS ALT2 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Lrrc57-202ENSMUST00000102497 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Ssu2-201ENSMUST00000060847 1321 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Cyp2a5-201ENSMUST00000005685 2013 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Foxj3-201ENSMUST00000044564 4789 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Cabp1-201ENSMUST00000031519 1370 ntAPPRIS P3 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Col2a1-202ENSMUST00000088355 4862 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 E230016M11Rik-201ENSMUST00000130657 1764 ntTSL 1 (best) BASIC14.32□□□□□ -0.12
Use1Q9CQ56 Tom1l2-205ENSMUST00000102682 2256 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Chd1-205ENSMUST00000173311 4211 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Zfp184-202ENSMUST00000102978 3198 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Arid3a-202ENSMUST00000105376 4892 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Gm15372-201ENSMUST00000120729 834 ntBASIC14.31□□□□□ -0.12
Use1Q9CQ56 Mir142hg-201ENSMUST00000123700 269 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Mpst-202ENSMUST00000167140 1279 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Gm29501-201ENSMUST00000186133 530 ntTSL 5 BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Gm30437-201ENSMUST00000206086 1201 ntBASIC14.31□□□□□ -0.12
Use1Q9CQ56 Gm7506-201ENSMUST00000207758 815 ntBASIC14.31□□□□□ -0.12
Use1Q9CQ56 AC153889.1-201ENSMUST00000219257 330 ntBASIC14.31□□□□□ -0.12
Use1Q9CQ56 Traf3ip1-201ENSMUST00000047242 3474 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Coil-202ENSMUST00000107898 3120 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Mapk1ip1-203ENSMUST00000119664 1883 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Elmsan1-202ENSMUST00000110294 7156 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Acp7-201ENSMUST00000040112 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Ttyh1-203ENSMUST00000119661 2512 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Cyp2w1-201ENSMUST00000031521 1512 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Sugp2-214ENSMUST00000164403 4099 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
Use1Q9CQ56 Rps6ka5-209ENSMUST00000222731 5642 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 24 ms