Protein–RNA interactions for Protein: Q99PQ2

Trim11, E3 ubiquitin-protein ligase TRIM11, mousemouse

Predictions only

Length 467 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim11Q99PQ2 Gm25990-201ENSMUST00000102440 86 ntBASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Trmt112-ps2-201ENSMUST00000117987 378 ntBASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Gm44930-202ENSMUST00000208733 689 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Mzb1-201ENSMUST00000025211 905 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Cort-201ENSMUST00000030815 677 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Pcdh20-201ENSMUST00000061628 5241 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Tcea1-202ENSMUST00000165720 2854 ntTSL 5 BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.36
Trim11Q99PQ2 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Tgfbr2-202ENSMUST00000061101 8092 ntTSL 1 (best) BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Gm5357-201ENSMUST00000212720 1924 ntBASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Iqsec3-201ENSMUST00000046373 6840 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Gjb1-201ENSMUST00000052130 1565 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Syne3-201ENSMUST00000067005 5097 ntAPPRIS ALT2 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Flywch1-202ENSMUST00000086325 2443 ntAPPRIS P1 TSL 1 (best) BASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Celf4-206ENSMUST00000224553 1729 ntBASIC17.27■□□□□ 0.35
Trim11Q99PQ2 Mtus2-204ENSMUST00000110514 1532 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 4933434E20Rik-203ENSMUST00000068798 1500 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Gm11185-201ENSMUST00000117732 1007 ntBASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Gm18489-201ENSMUST00000172565 551 ntBASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Gm10499-201ENSMUST00000174094 934 ntBASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Gm44202-201ENSMUST00000203549 532 ntTSL 3 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Atp5o-201ENSMUST00000023677 838 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Prdx6-201ENSMUST00000051925 959 ntTSL 2 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Rhox6-201ENSMUST00000006362 1010 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Gm37500-201ENSMUST00000192059 1443 ntBASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Ppt1-201ENSMUST00000030412 2381 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Uck2-202ENSMUST00000053686 4731 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Ren1-201ENSMUST00000094556 1592 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Hs3st3a1-201ENSMUST00000058652 3939 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Cdk16-201ENSMUST00000033380 3120 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Sirpa-203ENSMUST00000103202 3982 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Amn1-201ENSMUST00000095319 1369 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Dgki-203ENSMUST00000101532 4596 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Adgrb2-208ENSMUST00000121049 4871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Aatk-202ENSMUST00000103019 5177 ntAPPRIS P3 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Dpysl3-204ENSMUST00000121805 5484 ntTSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Sox1ot-202ENSMUST00000186174 7420 ntTSL 5 BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Chd1l-201ENSMUST00000029730 3008 ntAPPRIS P1 TSL 1 (best) BASIC17.26■□□□□ 0.35
Trim11Q99PQ2 Rfx5-207ENSMUST00000137088 4333 ntAPPRIS P1 TSL 5 BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Sacm1l-201ENSMUST00000026270 3558 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Gm16425-201ENSMUST00000118143 3130 ntBASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Slc3a2-202ENSMUST00000170157 2813 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Nabp1-205ENSMUST00000186684 2677 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Sra1-205ENSMUST00000173875 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Ptpn6-202ENSMUST00000112484 2219 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Hectd2-201ENSMUST00000047247 4731 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Gm43598-201ENSMUST00000202482 2479 ntBASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Derl1-201ENSMUST00000022993 3175 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Mansc4-201ENSMUST00000100780 1125 ntAPPRIS P2 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Hnrnpa1l2-ps-201ENSMUST00000129154 964 ntBASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Coa3-201ENSMUST00000017332 886 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Rbm14-203ENSMUST00000180008 370 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 AC148328.1-201ENSMUST00000216448 920 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Pdcd2l-201ENSMUST00000002710 1295 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Rps4l-201ENSMUST00000071745 943 ntBASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Abr-203ENSMUST00000094012 5236 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Ppm1m-201ENSMUST00000076258 1811 ntTSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Ube2j2-203ENSMUST00000105581 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Trim41-201ENSMUST00000047145 3432 ntAPPRIS P1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Ss18-203ENSMUST00000092041 2997 ntAPPRIS ALT1 TSL 1 (best) BASIC17.25■□□□□ 0.35
Trim11Q99PQ2 Nop56-202ENSMUST00000103198 1877 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Dnaja1-210ENSMUST00000164233 5622 ntAPPRIS P1 TSL 5 BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Gins4-201ENSMUST00000033950 1349 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Hic2-202ENSMUST00000115698 2765 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Rimkla-201ENSMUST00000049994 4097 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Grk3-203ENSMUST00000197776 1570 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Penk-201ENSMUST00000070375 1449 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Golt1b-201ENSMUST00000032372 2818 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Gm24589-201ENSMUST00000116692 94 ntBASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Gm37153-201ENSMUST00000193637 231 ntBASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Gm10459-201ENSMUST00000202708 1155 ntBASIC17.24■□□□□ 0.35
Trim11Q99PQ2 AC151836.1-202ENSMUST00000226259 753 ntBASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Ndufb9-201ENSMUST00000022980 704 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Kdm7a-201ENSMUST00000002305 9566 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Gm18856-201ENSMUST00000178096 1374 ntBASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 4933421O10Rik-201ENSMUST00000155691 3847 ntTSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Tm4sf4-201ENSMUST00000029377 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Ica1l-201ENSMUST00000027172 3650 ntAPPRIS P2 TSL 1 (best) BASIC17.24■□□□□ 0.35
Trim11Q99PQ2 Fndc3a-201ENSMUST00000089017 6143 ntAPPRIS P1 TSL 1 (best) BASIC17.24■□□□□ 0.35
Retrieved 100 of 76,532 protein–RNA pairs in 26.2 ms