Protein–RNA interactions for Protein: Q91XZ7

Pcdhb3, Protocadherin beta 3, mousemouse

Predictions only

Length 784 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdhb3Q91XZ7 Pdzrn3-201ENSMUST00000075994 4104 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Olfr56-201ENSMUST00000056759 1925 ntTSL 5 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Repin1-204ENSMUST00000135151 3057 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Dpy30-201ENSMUST00000112571 790 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Krt10-202ENSMUST00000211768 557 ntTSL 3 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Gm18669-201ENSMUST00000216049 778 ntBASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Ccl25-201ENSMUST00000024004 1058 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Sftpb-201ENSMUST00000070437 1131 ntAPPRIS ALT2 TSL 5 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Hist1h2af-201ENSMUST00000073261 399 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Tlnrd1-201ENSMUST00000094216 4433 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Cct6b-202ENSMUST00000100722 1871 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Pdgfa-203ENSMUST00000110896 1363 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Gpat2-201ENSMUST00000062211 2628 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Plpbp-202ENSMUST00000098851 1368 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Adal-201ENSMUST00000028702 2471 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Gm37240-203ENSMUST00000154148 2913 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Ubtf-209ENSMUST00000173870 2936 ntAPPRIS P3 TSL 5 BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
Pcdhb3Q91XZ7 Fndc7-201ENSMUST00000053065 3009 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Ddx4-202ENSMUST00000099166 3012 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Tfap2b-202ENSMUST00000064976 1946 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Casc3-204ENSMUST00000169695 3741 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Ccny-201ENSMUST00000053917 4017 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Gatc-201ENSMUST00000139167 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Kmt5b-208ENSMUST00000113977 6002 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 4930481A15Rik-201ENSMUST00000128542 2106 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Aim2-202ENSMUST00000147604 2839 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Alx4-201ENSMUST00000042078 5253 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Radil-201ENSMUST00000063635 3700 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Psme2-208ENSMUST00000161807 962 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Gm27742-201ENSMUST00000184667 60 ntBASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Gm36967-201ENSMUST00000193814 266 ntBASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Syde2-204ENSMUST00000212479 3810 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 AC156576.2-201ENSMUST00000222752 503 ntTSL 5 BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Prima1-201ENSMUST00000074416 909 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 E230029C05Rik-202ENSMUST00000207458 2445 ntTSL 5 BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Commd7-201ENSMUST00000071852 3210 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Shroom3-203ENSMUST00000113055 6765 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Slc29a1-222ENSMUST00000171847 2033 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Tbk1-201ENSMUST00000020316 3024 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Mocs1-204ENSMUST00000173033 2588 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Fam198a-204ENSMUST00000215990 2149 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Tyk2-205ENSMUST00000214864 1662 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Iqcd-202ENSMUST00000094391 1673 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Gnb1-201ENSMUST00000030940 3131 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
Pcdhb3Q91XZ7 Rbm47-201ENSMUST00000094756 2973 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Rnf180-203ENSMUST00000224662 2734 ntAPPRIS ALT2 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Abcg5-202ENSMUST00000163375 1613 ntTSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Arfip1-202ENSMUST00000107687 1714 ntTSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Zfp865-201ENSMUST00000076251 7503 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Isyna1-204ENSMUST00000210005 1914 ntAPPRIS P1 TSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Usp1-202ENSMUST00000091358 3527 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Rerg-204ENSMUST00000149100 635 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Gm20422-202ENSMUST00000149782 956 ntTSL 2 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Sytl3-204ENSMUST00000159880 1296 ntTSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Gm28033-201ENSMUST00000184224 96 ntBASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Ighv6-1-201ENSMUST00000193612 343 ntBASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Otx2os1-206ENSMUST00000228153 787 ntBASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Upk3a-201ENSMUST00000023070 1106 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Epha2-201ENSMUST00000006614 3913 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Cdk11b-203ENSMUST00000105600 3170 ntAPPRIS P3 TSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 2810474O19Rik-209ENSMUST00000189932 5269 ntAPPRIS P2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Fam20a-201ENSMUST00000020938 2541 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Socs7-201ENSMUST00000045540 7015 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Git2-204ENSMUST00000112185 5032 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 BC003965-201ENSMUST00000088307 3022 ntAPPRIS P1 TSL 2 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Bst1-201ENSMUST00000101237 2856 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Mzf1-204ENSMUST00000182490 2872 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
Pcdhb3Q91XZ7 Rsbn1-202ENSMUST00000068879 6712 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Mrm2-201ENSMUST00000031536 1443 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Ankrd44-201ENSMUST00000044359 6192 ntAPPRIS ALT2 TSL 5 BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Iffo1-202ENSMUST00000119527 2840 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Rnpepl1-201ENSMUST00000027487 3337 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Sema3b-201ENSMUST00000073448 2987 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Ap4b1-201ENSMUST00000047285 2799 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Ap4b1-202ENSMUST00000076599 2692 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Islr-202ENSMUST00000168864 2076 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Gm3468-201ENSMUST00000165193 1955 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Gm2956-201ENSMUST00000177786 1955 ntAPPRIS P1 TSL 5 BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Rps27a-202ENSMUST00000102845 791 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Atp6v1g2-203ENSMUST00000130992 524 ntTSL 2 BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Gm15890-201ENSMUST00000161024 770 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Fbxo6-208ENSMUST00000168503 1240 ntAPPRIS P1 TSL 2 BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Gm17971-201ENSMUST00000190239 806 ntBASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Gmnn-201ENSMUST00000006898 1127 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
Pcdhb3Q91XZ7 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC15.17■□□□□ 0.02
Retrieved 100 of 76,532 protein–RNA pairs in 25.9 ms