Protein–RNA interactions for Protein: Q8VC85

Lsm1, U6 snRNA-associated Sm-like protein LSm1, mousemouse

Predictions only

Length 133 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Lsm1Q8VC85 Nfkb1-201ENSMUST00000029812 4117 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Hpse-201ENSMUST00000045617 3117 ntAPPRIS P2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Slc39a11-201ENSMUST00000042657 2781 ntAPPRIS ALT2 TSL 2 BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Sox5-202ENSMUST00000077160 2526 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Kdm8-201ENSMUST00000033010 2389 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Mospd2-201ENSMUST00000004715 2015 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 4933415F23Rik-201ENSMUST00000073179 1781 ntAPPRIS P1 BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 A830012C17Rik-201ENSMUST00000131498 1665 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Lypd1-205ENSMUST00000162899 1511 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Dlk2-203ENSMUST00000166617 1528 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Syt6-201ENSMUST00000090697 4416 ntAPPRIS P1 TSL 5 BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 9130401M01Rik-201ENSMUST00000100655 1341 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Mocs1-202ENSMUST00000165390 729 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 9530052E02Rik-201ENSMUST00000180750 949 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Gm37584-201ENSMUST00000193595 1290 ntBASIC14.53□□□□□ -0.08
Lsm1Q8VC85 D530014G21Rik-201ENSMUST00000208416 587 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Map7d1-203ENSMUST00000122129 3249 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Gm10605-202ENSMUST00000183019 3198 ntBASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Pygo2-201ENSMUST00000060061 3198 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Zfp574-201ENSMUST00000053410 3145 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Btbd3-202ENSMUST00000091556 4657 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Zbtb20-202ENSMUST00000114690 2759 ntAPPRIS ALT1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Hnrnpr-202ENSMUST00000105850 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Disc1-207ENSMUST00000121953 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Kmt5b-206ENSMUST00000113973 6130 ntAPPRIS ALT2 TSL 5 BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Nsd3-207ENSMUST00000143445 2416 ntTSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Ushbp1-201ENSMUST00000049184 2438 ntAPPRIS P1 TSL 1 (best) BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Fen1-204ENSMUST00000156291 2373 ntAPPRIS P1 TSL 2 BASIC14.53□□□□□ -0.08
Lsm1Q8VC85 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Fam178b-201ENSMUST00000114981 1659 ntAPPRIS P3 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Tmem241-205ENSMUST00000209859 1426 ntAPPRIS P4 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Gm43195-201ENSMUST00000200614 2332 ntBASIC14.52□□□□□ -0.08
Lsm1Q8VC85 D10Jhu81e-201ENSMUST00000001242 1378 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Kcnk10-203ENSMUST00000221305 1357 ntTSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Chd4-201ENSMUST00000056889 6697 ntAPPRIS P2 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Top3b-201ENSMUST00000023465 3073 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.08
Lsm1Q8VC85 Blvrb-204ENSMUST00000133750 509 ntTSL 2 BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Gm16194-203ENSMUST00000141239 362 ntTSL 3 BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Emp3-202ENSMUST00000164119 784 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Gm45504-201ENSMUST00000211407 2107 ntBASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Gm18669-201ENSMUST00000216049 778 ntBASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Csrp2-207ENSMUST00000220409 780 ntTSL 2 BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 2210406O10Rik-201ENSMUST00000044964 937 ntTSL 5 BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Crb2-201ENSMUST00000050372 6372 ntAPPRIS P1 TSL 5 BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Tcf3-208ENSMUST00000105344 2946 ntAPPRIS ALT2 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Plin5-201ENSMUST00000019808 1986 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Psmd13-201ENSMUST00000026560 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Fam109b-201ENSMUST00000050349 2745 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Oas1a-201ENSMUST00000080322 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Dnajc1-209ENSMUST00000166495 5497 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Arhgef18-201ENSMUST00000004684 5271 ntAPPRIS P1 TSL 1 (best) BASIC14.52□□□□□ -0.09
Lsm1Q8VC85 9330121J05Rik-201ENSMUST00000192267 3009 ntBASIC14.52□□□□□ -0.09
Lsm1Q8VC85 Mxra8-201ENSMUST00000030947 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Gtf2h5-201ENSMUST00000039487 2245 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Ttc9c-201ENSMUST00000088092 1585 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Flt1-202ENSMUST00000031653 6895 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Dsn1-201ENSMUST00000103129 2080 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Dlc1-203ENSMUST00000098826 6241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Gm32369-201ENSMUST00000222630 1467 ntTSL 5 BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Edem3-204ENSMUST00000191070 3127 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Tor1aip1-201ENSMUST00000027738 1952 ntAPPRIS P3 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Pcdha7-201ENSMUST00000192631 5337 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Ror1-201ENSMUST00000039630 5762 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Gm13111-201ENSMUST00000136217 3542 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Gm44443-201ENSMUST00000204396 5633 ntBASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Lcat-201ENSMUST00000038896 1342 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Cdkn1b-201ENSMUST00000003115 2393 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Poc1b-204ENSMUST00000159990 3449 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Tada3-201ENSMUST00000032410 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Alk-201ENSMUST00000086639 4866 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Gm13403-202ENSMUST00000134271 674 ntTSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 1500009L16Rik-201ENSMUST00000150459 1194 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Wfdc6b-201ENSMUST00000094346 984 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Kit-204ENSMUST00000144270 5241 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Ggn-204ENSMUST00000208330 2205 ntAPPRIS ALT2 TSL 5 BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Agbl5-213ENSMUST00000201917 3579 ntAPPRIS ALT2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Ntng1-205ENSMUST00000106575 1620 ntAPPRIS ALT1 TSL 5 BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Ntng1-202ENSMUST00000072596 1620 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Efr3b-201ENSMUST00000111178 6547 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 1700051A21Rik-201ENSMUST00000147937 1516 ntTSL 5 BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Clns1a-201ENSMUST00000026506 1504 ntAPPRIS P1 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Zfp423-202ENSMUST00000109655 4907 ntAPPRIS P2 TSL 1 (best) BASIC14.51□□□□□ -0.09
Lsm1Q8VC85 Pitx2-206ENSMUST00000174623 1493 ntTSL 2 BASIC14.5□□□□□ -0.09
Lsm1Q8VC85 Gm38575-203ENSMUST00000215824 1490 ntTSL 1 (best) BASIC14.5□□□□□ -0.09
Lsm1Q8VC85 Inha-201ENSMUST00000037330 1475 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lsm1Q8VC85 Eif5a-207ENSMUST00000108610 1409 ntAPPRIS P1 TSL 1 (best) BASIC14.5□□□□□ -0.09
Lsm1Q8VC85 Cpsf6-206ENSMUST00000176670 2227 ntTSL 5 BASIC14.5□□□□□ -0.09
Lsm1Q8VC85 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC14.5□□□□□ -0.09
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms