Protein–RNA interactions for Protein: Q8CEC0

Nup88, Nuclear pore complex protein Nup88, mousemouse

Known RBP Predictions only

Length 753 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nup88Q8CEC0 Mrap2-203ENSMUST00000179313 2039 ntAPPRIS P1 TSL 2 BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Tle3-205ENSMUST00000159630 4065 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Gm37728-201ENSMUST00000195025 2292 ntBASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Ythdc2-201ENSMUST00000037763 7215 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Wdr61-203ENSMUST00000121204 1290 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Hbb-bh0-201ENSMUST00000124800 129 ntBASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 1700012D14Rik-201ENSMUST00000209597 605 ntTSL 3 BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 AC159106.1-201ENSMUST00000224421 690 ntBASIC17.86■□□□□ 0.45
Nup88Q8CEC0 A830031A19Rik-201ENSMUST00000068360 757 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Mdk-202ENSMUST00000069423 773 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Pik3ip1-202ENSMUST00000093399 1098 ntAPPRIS ALT2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Gxylt2-201ENSMUST00000032157 7658 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Abhd15-201ENSMUST00000094004 2662 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Fam103a1-201ENSMUST00000042166 1452 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Il11ra1-202ENSMUST00000108040 1837 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Eml5-210ENSMUST00000223282 7595 ntAPPRIS P1 TSL 5 BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Wfikkn1-201ENSMUST00000095487 1981 ntAPPRIS P1 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Shmt2-201ENSMUST00000026470 2289 ntAPPRIS P2 TSL 1 (best) BASIC17.86■□□□□ 0.45
Nup88Q8CEC0 Gm44443-201ENSMUST00000204396 5633 ntBASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Tmem108-204ENSMUST00000189588 2850 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Zmym3-201ENSMUST00000063577 6057 ntAPPRIS P2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Casc4-201ENSMUST00000078752 4215 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Sipa1l1-202ENSMUST00000166429 8215 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Commd6-201ENSMUST00000100339 1090 ntAPPRIS P3 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Hist1h4k-201ENSMUST00000102983 312 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Dlgap4-204ENSMUST00000109566 1595 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Gm14494-201ENSMUST00000118786 435 ntBASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Pogk-204ENSMUST00000135673 2433 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Gpd1l-204ENSMUST00000146623 4391 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Ankrd65-202ENSMUST00000165000 1140 ntAPPRIS ALT2 TSL 5 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Nudt3-209ENSMUST00000176876 465 ntTSL 2 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Ascl5-201ENSMUST00000180436 567 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Zfp787-206ENSMUST00000208746 535 ntTSL 2 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 AL669916.2-201ENSMUST00000213219 358 ntTSL 2 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 CT943659.1-201ENSMUST00000215459 326 ntBASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Fdft1-204ENSMUST00000224625 3698 ntAPPRIS P1 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Krt2-201ENSMUST00000023712 2613 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Mrpl46-201ENSMUST00000032841 1134 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Fbxl8-201ENSMUST00000036221 1901 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Nudt3-202ENSMUST00000062397 558 ntTSL 3 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Pacs2-201ENSMUST00000084891 5480 ntAPPRIS P2 TSL 5 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Nek1-202ENSMUST00000120689 5478 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Sik1-201ENSMUST00000024839 4511 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Skor1-202ENSMUST00000116613 3591 ntAPPRIS ALT2 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Hcfc2-201ENSMUST00000020478 3422 ntAPPRIS P1 TSL 5 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Ecel1-203ENSMUST00000160810 2898 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Gm45133-201ENSMUST00000207548 2773 ntBASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Fdx1-202ENSMUST00000214013 2759 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Fam169b-201ENSMUST00000098378 2776 ntTSL 5 BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Gm26793-201ENSMUST00000180930 2732 ntTSL 1 (best) BASIC17.85■□□□□ 0.45
Nup88Q8CEC0 Gm12522-201ENSMUST00000142833 2439 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Ddc-210ENSMUST00000178704 2018 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Cdadc1-204ENSMUST00000171683 1892 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Magi1-202ENSMUST00000089317 7209 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Prkcz2-201ENSMUST00000206136 1756 ntBASIC17.84■□□□□ 0.45
Nup88Q8CEC0 2210011K15Rik-201ENSMUST00000190690 1741 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Mettl27-202ENSMUST00000068617 1685 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Lhpp-201ENSMUST00000033241 1612 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Rbm42-202ENSMUST00000108141 1526 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Psmc4-201ENSMUST00000032824 1440 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Gfod1-201ENSMUST00000055341 6928 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Cxcl10-202ENSMUST00000118006 1353 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 4921511I17Rik-201ENSMUST00000220545 1341 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Zfp90-201ENSMUST00000034382 2632 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Gm12260-201ENSMUST00000122447 411 ntBASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Gm13962-201ENSMUST00000131512 611 ntTSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 2200002J24Rik-201ENSMUST00000013227 333 ntAPPRIS P1 TSL 3 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Hmgb1-208ENSMUST00000139443 923 ntTSL 2 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Gm13830-202ENSMUST00000144202 381 ntTSL 3 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 9130024F11Rik-204ENSMUST00000187927 517 ntTSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 1700021F07Rik-201ENSMUST00000029023 646 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Anapc15-202ENSMUST00000035395 836 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Klk14-201ENSMUST00000056329 1271 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Fam8a1-201ENSMUST00000099547 3664 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Vldlr-202ENSMUST00000047645 3260 ntTSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Frmd5-207ENSMUST00000138157 4230 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Unc5d-202ENSMUST00000209401 3081 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Unc5d-203ENSMUST00000210298 3060 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Unc5d-205ENSMUST00000211448 3087 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Repin1-207ENSMUST00000163452 2959 ntAPPRIS P3 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Kif21a-203ENSMUST00000100304 6439 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Kif21a-202ENSMUST00000088614 6439 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Cyp2ab1-201ENSMUST00000023513 2720 ntTSL 5 BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Dsn1-202ENSMUST00000103130 2636 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Nup88Q8CEC0 Gm29676-201ENSMUST00000222396 1689 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Dzip3-201ENSMUST00000114516 3331 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Ythdf3-202ENSMUST00000108346 4929 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Otud4-202ENSMUST00000173078 7354 ntAPPRIS P4 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Large2-203ENSMUST00000111284 2449 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Gipc2-201ENSMUST00000046614 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Rbm26-203ENSMUST00000163499 4212 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Nup88Q8CEC0 Bag4-201ENSMUST00000038498 4876 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Retrieved 100 of 76,532 protein–RNA pairs in 49.6 ms