Protein–RNA interactions for Protein: Q8C0E3

Trim47, Tripartite motif-containing protein 47, mousemouse

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim47Q8C0E3 Rpl18-ps1-201ENSMUST00000121555 525 ntBASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Fam71e1-204ENSMUST00000205422 366 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Selenov-201ENSMUST00000056589 1267 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
Trim47Q8C0E3 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC16.77■□□□□ 0.27
Trim47Q8C0E3 Bend4-201ENSMUST00000169190 7935 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.27
Trim47Q8C0E3 Gm43352-201ENSMUST00000196419 3065 ntBASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Hs3st5-201ENSMUST00000058738 3078 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Celf4-206ENSMUST00000224553 1729 ntBASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Tpgs2-202ENSMUST00000148255 3424 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Syt6-202ENSMUST00000117221 4394 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Ccdc158-204ENSMUST00000151180 3352 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 P3h1-204ENSMUST00000121111 3188 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Nosip-202ENSMUST00000107829 972 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Gm20481-201ENSMUST00000173680 564 ntAPPRIS P1 TSL 3 BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC16.76■□□□□ 0.27
Trim47Q8C0E3 AC164567.1-201ENSMUST00000219185 960 ntBASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Pold4-201ENSMUST00000025773 910 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Gm9945-201ENSMUST00000067523 932 ntAPPRIS P1 BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Myrf-202ENSMUST00000186056 3636 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Supt5-208ENSMUST00000209141 3755 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Chpf-201ENSMUST00000079205 2892 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Gnat1-201ENSMUST00000010205 2328 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Shd-202ENSMUST00000223629 1430 ntAPPRIS P2 BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Klhl29-201ENSMUST00000020958 7041 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Myb-203ENSMUST00000188495 3693 ntAPPRIS ALT2 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Gm5049-201ENSMUST00000195878 1590 ntBASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Camk2d-221ENSMUST00000171289 2217 ntTSL 5 BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Ppm1e-201ENSMUST00000055438 6344 ntAPPRIS P1 TSL 1 (best) BASIC16.76■□□□□ 0.27
Trim47Q8C0E3 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Gm11839-201ENSMUST00000120647 1953 ntBASIC16.75■□□□□ 0.27
Trim47Q8C0E3 1010001N08Rik-201ENSMUST00000180789 1967 ntTSL 2 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Ppp6r2-208ENSMUST00000228284 3297 ntAPPRIS P1 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Idh3b-201ENSMUST00000028892 1616 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Fbxo27-201ENSMUST00000039998 1946 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Asphd1-202ENSMUST00000106339 518 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Dio1-202ENSMUST00000106748 396 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Nudt1-204ENSMUST00000110826 606 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Gm14321-202ENSMUST00000139927 351 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Cldn25-ps-201ENSMUST00000197641 693 ntBASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Mrpl20-201ENSMUST00000030942 764 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Nfya-206ENSMUST00000160319 1407 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Galt-202ENSMUST00000108038 1859 ntAPPRIS ALT2 TSL 2 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Pcbp3-201ENSMUST00000001148 2013 ntAPPRIS P3 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Zbtb46-205ENSMUST00000180222 2014 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Ankrd13a-201ENSMUST00000102578 3717 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Ccdc42-203ENSMUST00000154294 1384 ntAPPRIS P1 TSL 5 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Sirt5-206ENSMUST00000221481 1548 ntTSL 5 BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Prr5l-201ENSMUST00000043845 2290 ntAPPRIS P1 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Pitpna-203ENSMUST00000143219 3761 ntAPPRIS P2 TSL 1 (best) BASIC16.75■□□□□ 0.27
Trim47Q8C0E3 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Urgcp-201ENSMUST00000053427 5527 ntAPPRIS ALT2 TSL 5 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Ecm1-201ENSMUST00000029753 1894 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Nrg2-203ENSMUST00000115713 3001 ntAPPRIS P1 TSL 5 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 App-202ENSMUST00000226232 3120 ntAPPRIS ALT2 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Foxg1-204ENSMUST00000179669 3973 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Snrk-201ENSMUST00000118886 4811 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Ifna12-201ENSMUST00000102806 797 ntAPPRIS P1 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Ankrd13d-204ENSMUST00000167215 639 ntTSL 3 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Rpph1-201ENSMUST00000175096 319 ntBASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Irs3-202ENSMUST00000196511 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 AC151286.1-201ENSMUST00000198489 145 ntBASIC16.74■□□□□ 0.27
Trim47Q8C0E3 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Gm44662-201ENSMUST00000206970 412 ntTSL 5 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Zfyve21-206ENSMUST00000222843 705 ntTSL 3 BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Zdhhc15-201ENSMUST00000042070 5509 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Gm10154-201ENSMUST00000084445 354 ntBASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Gm16279-201ENSMUST00000149452 2945 ntTSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Whrn-207ENSMUST00000107393 4028 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Whrn-203ENSMUST00000084510 4049 ntAPPRIS P4 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Adam15-202ENSMUST00000074582 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Acaa2-201ENSMUST00000041053 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Spsb3-201ENSMUST00000024976 1947 ntAPPRIS P3 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Rcn2-201ENSMUST00000114276 2024 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Mllt1-201ENSMUST00000025053 3608 ntAPPRIS P1 TSL 1 (best) BASIC16.74■□□□□ 0.27
Trim47Q8C0E3 Ifnz-201ENSMUST00000105144 1462 ntAPPRIS P1 BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Trpc3-201ENSMUST00000029271 3694 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Mindy1-212ENSMUST00000168223 1812 ntTSL 5 BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Ube2d3-208ENSMUST00000197134 2493 ntAPPRIS ALT1 TSL 5 BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Mok-202ENSMUST00000070565 1693 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 AC155252.2-201ENSMUST00000226946 680 ntBASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Lce1b-201ENSMUST00000029531 647 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Lce1f-201ENSMUST00000047153 728 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Trim47Q8C0E3 Crxos-201ENSMUST00000098801 934 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.27
Retrieved 100 of 76,532 protein–RNA pairs in 25.1 ms