Protein–RNA interactions for Protein: Q80VI1

Trim56, E3 ubiquitin-protein ligase TRIM56, mousemouse

Known RBP Predictions only

Length 734 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim56Q80VI1 Adipor1-202ENSMUST00000112237 3446 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Nelfa-201ENSMUST00000030993 2580 ntAPPRIS P1 TSL 1 (best) BASIC17.85■□□□□ 0.45
Trim56Q80VI1 Rxrg-203ENSMUST00000111384 1967 ntAPPRIS P1 TSL 5 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Osbpl10-201ENSMUST00000046627 1872 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Usp1-201ENSMUST00000030289 3577 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Mterf4-202ENSMUST00000112942 1525 ntTSL 2 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 D630044L22Rik-201ENSMUST00000181174 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Agap1-204ENSMUST00000190096 4078 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Ano10-201ENSMUST00000042546 2653 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Gm14822-201ENSMUST00000122247 291 ntBASIC17.84■□□□□ 0.45
Trim56Q80VI1 Cdkn1a-203ENSMUST00000122348 857 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Edn3-203ENSMUST00000140908 731 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Prss45-202ENSMUST00000146794 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Mymx-202ENSMUST00000169137 616 ntAPPRIS P4 TSL 2 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Gm29456-201ENSMUST00000189894 768 ntTSL 3 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Abhd18-207ENSMUST00000203892 1021 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Gm29909-201ENSMUST00000214500 922 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 CT010506.4-201ENSMUST00000225457 351 ntBASIC17.84■□□□□ 0.45
Trim56Q80VI1 Spr-201ENSMUST00000045986 1230 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Pecr-202ENSMUST00000097698 932 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Ssfa2-201ENSMUST00000111784 4999 ntAPPRIS ALT2 TSL 5 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Fzd10-201ENSMUST00000117102 3250 ntAPPRIS P1 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Crmp1-202ENSMUST00000114158 3051 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Fam219b-201ENSMUST00000093833 3001 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Sept6-203ENSMUST00000115239 1845 ntTSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Aldh3a1-201ENSMUST00000019246 1729 ntAPPRIS P1 TSL 1 (best) BASIC17.84■□□□□ 0.45
Trim56Q80VI1 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Slc45a4-204ENSMUST00000132607 2457 ntTSL 1 (best) BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Gm5648-201ENSMUST00000122244 1587 ntBASIC17.83■□□□□ 0.45
Trim56Q80VI1 Ephx3-202ENSMUST00000162117 1590 ntAPPRIS ALT2 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Des-201ENSMUST00000027409 3028 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Mid2-202ENSMUST00000112990 6271 ntAPPRIS P1 TSL 5 BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Fam103a1-202ENSMUST00000118190 1391 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Emp2-201ENSMUST00000078357 3440 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.45
Trim56Q80VI1 Gm17018-201ENSMUST00000047057 1345 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Casp8-201ENSMUST00000027189 2585 ntAPPRIS P3 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Rpl34-ps1-201ENSMUST00000121998 354 ntBASIC17.83■□□□□ 0.44
Trim56Q80VI1 Bnipl-204ENSMUST00000137250 1251 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Zfp125-202ENSMUST00000144811 704 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Gm26769-201ENSMUST00000180469 619 ntTSL 3 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Psmg3-202ENSMUST00000182602 733 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Gm29520-201ENSMUST00000191209 1067 ntTSL 5 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Msantd1-204ENSMUST00000212362 798 ntAPPRIS ALT2 TSL 5 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Higd1a-206ENSMUST00000215300 605 ntAPPRIS P1 TSL 3 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 1500035N22Rik-201ENSMUST00000075081 865 ntTSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Rpl34-ps2-201ENSMUST00000081679 354 ntBASIC17.83■□□□□ 0.44
Trim56Q80VI1 Gm10154-201ENSMUST00000084445 354 ntBASIC17.83■□□□□ 0.44
Trim56Q80VI1 Apol7d-201ENSMUST00000097699 826 ntTSL 2 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Islr2-205ENSMUST00000170421 4071 ntAPPRIS P3 TSL 3 BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Otub1-201ENSMUST00000025679 1713 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Nhlh2-202ENSMUST00000196324 2647 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Cyfip2-205ENSMUST00000165599 6659 ntAPPRIS P1 TSL 1 (best) BASIC17.83■□□□□ 0.44
Trim56Q80VI1 Ret-202ENSMUST00000088790 4497 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Tcf3-209ENSMUST00000105345 2950 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Miip-202ENSMUST00000119975 1879 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Mef2b-204ENSMUST00000110146 1342 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Prelid1-201ENSMUST00000021942 2644 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Gm17271-201ENSMUST00000165535 355 ntBASIC17.82■□□□□ 0.44
Trim56Q80VI1 Rpph1-201ENSMUST00000175096 319 ntBASIC17.82■□□□□ 0.44
Trim56Q80VI1 Dpf3-205ENSMUST00000177801 1092 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 1700021A07Rik-203ENSMUST00000188024 404 ntTSL 3 BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Ybx1-ps2-201ENSMUST00000201305 957 ntBASIC17.82■□□□□ 0.44
Trim56Q80VI1 Lce3b-201ENSMUST00000046234 562 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Tal1-201ENSMUST00000030489 4213 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Pcolce-201ENSMUST00000031731 1626 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Dclk2-201ENSMUST00000029719 4012 ntAPPRIS P3 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Ankrd27-202ENSMUST00000186245 1926 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Dcaf17-201ENSMUST00000064141 1905 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Chpf-202ENSMUST00000094818 3065 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Zfp385a-201ENSMUST00000168828 2291 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Nde1-201ENSMUST00000023359 2287 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Fnip2-201ENSMUST00000076136 3775 ntAPPRIS P2 TSL 5 BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Islr2-202ENSMUST00000163200 4123 ntAPPRIS ALT2 TSL 1 (best) BASIC17.82■□□□□ 0.44
Trim56Q80VI1 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Coro6-201ENSMUST00000021190 1418 ntAPPRIS P5 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Erf-201ENSMUST00000045847 3505 ntAPPRIS P2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Gm12689-201ENSMUST00000094955 1359 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Gm21981-201ENSMUST00000143789 2721 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Zfp281-202ENSMUST00000112046 4937 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Chac1-201ENSMUST00000028780 1637 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Ralb-201ENSMUST00000004565 2289 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Nbea-201ENSMUST00000029374 10986 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Elf3-202ENSMUST00000185752 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Klk6-202ENSMUST00000107967 1172 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Sfxn5-203ENSMUST00000113787 638 ntTSL 2 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Gm13849-201ENSMUST00000153328 835 ntTSL 5 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 Olfr1344-201ENSMUST00000168341 1061 ntAPPRIS P1 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 1190007I07Rik-202ENSMUST00000176200 586 ntAPPRIS P1 TSL 2 BASIC17.81■□□□□ 0.44
Trim56Q80VI1 1190007I07Rik-203ENSMUST00000183363 406 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
Retrieved 100 of 76,532 protein–RNA pairs in 29.3 ms