Protein–RNA interactions for Protein: Q62318

Trim28, Transcription intermediary factor 1-beta, mousemouse

Predictions only

Length 834 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28Q62318 Hras-203ENSMUST00000124314 1073 ntTSL 5 BASIC19.57■□□□□ 0.72
Trim28Q62318 Vsig2-204ENSMUST00000215271 891 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Rbfox2-208ENSMUST00000227930 1218 ntBASIC19.57■□□□□ 0.72
Trim28Q62318 Rph3al-202ENSMUST00000066504 988 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC19.57■□□□□ 0.72
Trim28Q62318 Prpf40b-212ENSMUST00000145482 3308 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Lrch3-210ENSMUST00000170201 2902 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Wdr12-202ENSMUST00000117438 3251 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Trim28Q62318 Nucb1-201ENSMUST00000033096 2111 ntAPPRIS ALT2 TSL 5 BASIC19.57■□□□□ 0.72
Trim28Q62318 Chst3-202ENSMUST00000135158 6108 ntAPPRIS P2 TSL 5 BASIC19.57■□□□□ 0.72
Trim28Q62318 Vav1-204ENSMUST00000169220 2810 ntAPPRIS ALT2 TSL 1 (best) BASIC19.57■□□□□ 0.72
Trim28Q62318 Kcnj8-201ENSMUST00000032374 2269 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Tmem255a-203ENSMUST00000089056 1745 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Rfc3-201ENSMUST00000038131 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Zbtb16-202ENSMUST00000216150 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Stra8-203ENSMUST00000114999 1455 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Mrto4-202ENSMUST00000102503 1221 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Ighv4-1-201ENSMUST00000103464 414 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trim28Q62318 Mir7023-201ENSMUST00000185093 64 ntBASIC19.56■□□□□ 0.72
Trim28Q62318 Plch2-212ENSMUST00000186598 2119 ntTSL 5 BASIC19.56■□□□□ 0.72
Trim28Q62318 Gm28630-201ENSMUST00000187806 498 ntBASIC19.56■□□□□ 0.72
Trim28Q62318 Gm38294-201ENSMUST00000192831 381 ntBASIC19.56■□□□□ 0.72
Trim28Q62318 Mcee-203ENSMUST00000206194 532 ntTSL 2 BASIC19.56■□□□□ 0.72
Trim28Q62318 Gm20949-201ENSMUST00000206478 952 ntBASIC19.56■□□□□ 0.72
Trim28Q62318 Krtap19-4-201ENSMUST00000051103 304 ntAPPRIS P1 BASIC19.56■□□□□ 0.72
Trim28Q62318 Zfp13-201ENSMUST00000057029 2139 ntAPPRIS P2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Pip4k2a-201ENSMUST00000006912 3477 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Wnk2-204ENSMUST00000110096 6534 ntAPPRIS ALT2 TSL 5 BASIC19.56■□□□□ 0.72
Trim28Q62318 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Xylt1-201ENSMUST00000032892 9020 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
Trim28Q62318 Pkp2-202ENSMUST00000161342 2931 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Pkp2-201ENSMUST00000039408 2918 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Rasgef1c-202ENSMUST00000093141 2120 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Elf2-201ENSMUST00000062009 3353 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Zfp868-202ENSMUST00000121886 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Bloc1s3-201ENSMUST00000077408 3188 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 E430024P14Rik-202ENSMUST00000160177 2050 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 4833422C13Rik-201ENSMUST00000099331 2083 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Pgm1-201ENSMUST00000087324 2369 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Hnrnpll-201ENSMUST00000061331 3116 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Trim28Q62318 Jakmip3-201ENSMUST00000106111 1571 ntAPPRIS P1 TSL 5 BASIC19.55■□□□□ 0.72
Trim28Q62318 Fam53b-204ENSMUST00000106165 1232 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Gm6539-201ENSMUST00000119157 1064 ntBASIC19.55■□□□□ 0.72
Trim28Q62318 Tpt1-ps6-201ENSMUST00000121768 523 ntBASIC19.55■□□□□ 0.72
Trim28Q62318 Cyp27a1-201ENSMUST00000027356 1892 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Rps6ka3-201ENSMUST00000033671 7244 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Tle2-205ENSMUST00000135211 2746 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Bbs10-201ENSMUST00000040454 2744 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
Trim28Q62318 Abraxas1-202ENSMUST00000055245 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Diaph2-201ENSMUST00000037854 3742 ntAPPRIS P2 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Wnk2-211ENSMUST00000162581 6628 ntAPPRIS ALT2 TSL 5 BASIC19.55■□□□□ 0.72
Trim28Q62318 Acp5-201ENSMUST00000069330 1356 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
Trim28Q62318 Fgf13-203ENSMUST00000119833 2237 ntTSL 5 BASIC19.55■□□□□ 0.72
Trim28Q62318 Mtmr7-202ENSMUST00000048898 2488 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Nfkbid-202ENSMUST00000108175 2000 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Lmbr1-204ENSMUST00000198105 2274 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Pex5-202ENSMUST00000080557 3073 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Arhgef9-219ENSMUST00000199920 1976 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Trim28Q62318 Gm12264-201ENSMUST00000123949 500 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Gm15458-201ENSMUST00000156950 709 ntTSL 5 BASIC19.54■□□□□ 0.72
Trim28Q62318 Erdr1-204ENSMUST00000179483 688 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Prss47-201ENSMUST00000182457 828 ntAPPRIS ALT2 TSL 5 BASIC19.54■□□□□ 0.72
Trim28Q62318 1700025N23Rik-201ENSMUST00000186189 915 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Gm10747-201ENSMUST00000217799 1014 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Erp27-201ENSMUST00000032343 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Klk5-201ENSMUST00000048444 1239 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Tnfaip2-202ENSMUST00000109792 3284 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Nfic-207ENSMUST00000221817 1531 ntTSL 5 BASIC19.54■□□□□ 0.72
Trim28Q62318 Arxes2-201ENSMUST00000058119 1532 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
Trim28Q62318 Zbtb7c-201ENSMUST00000058997 4569 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Hnrnpm-205ENSMUST00000139302 2428 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Tubb3-201ENSMUST00000071134 1868 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
Trim28Q62318 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC19.54■□□□□ 0.72
Trim28Q62318 Ggh-201ENSMUST00000098242 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Sntb2-201ENSMUST00000047425 3225 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm26755-201ENSMUST00000180703 2657 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Kcnj14-201ENSMUST00000071937 2681 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm16565-201ENSMUST00000159138 2181 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Sync-201ENSMUST00000102599 2042 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Aen-201ENSMUST00000107421 2007 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Rnf157-202ENSMUST00000106398 4553 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Trim28Q62318 Lrriq4-202ENSMUST00000108267 2387 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 H60b-201ENSMUST00000105522 1029 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Abhd11-202ENSMUST00000111216 972 ntTSL 3 BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm15825-201ENSMUST00000159108 918 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm20650-201ENSMUST00000175690 198 ntTSL 3 BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm17399-201ENSMUST00000181824 1181 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Gm27622-201ENSMUST00000183779 60 ntBASIC19.53■□□□□ 0.72
Trim28Q62318 Gm27306-201ENSMUST00000183970 107 ntBASIC19.53■□□□□ 0.72
Trim28Q62318 Panct2-202ENSMUST00000188631 625 ntTSL 3 BASIC19.53■□□□□ 0.72
Trim28Q62318 4930448I06Rik-201ENSMUST00000194002 546 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Ighv8-7-201ENSMUST00000194349 297 ntBASIC19.53■□□□□ 0.72
Trim28Q62318 Chst10-206ENSMUST00000194361 2996 ntAPPRIS ALT2 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 B9d2-203ENSMUST00000205658 995 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
Trim28Q62318 Olfr975-201ENSMUST00000054067 933 ntAPPRIS P1 BASIC19.53■□□□□ 0.72
Trim28Q62318 Agbl5-208ENSMUST00000201168 3199 ntAPPRIS ALT2 TSL 5 BASIC19.53■□□□□ 0.72
Retrieved 100 of 76,532 protein–RNA pairs in 35.1 ms