Protein–RNA interactions for Protein: Q61245

Col11a1, Collagen alpha-1(XI) chain, mousemouse

Predictions only

Length 1,804 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Col11a1Q61245 Slc35f2-201ENSMUST00000048670 2558 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Camp-201ENSMUST00000112022 758 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Stra8-202ENSMUST00000114997 1207 ntAPPRIS ALT2 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Mvk-203ENSMUST00000124260 1051 ntTSL 5 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Ift20-203ENSMUST00000128788 1141 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Snhg17-201ENSMUST00000133449 933 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Snhg9-201ENSMUST00000161706 183 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 1700122O11Rik-201ENSMUST00000178823 771 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Gm7558-201ENSMUST00000193221 1165 ntBASIC16.7■□□□□ 0.26
Col11a1Q61245 Gm9803-202ENSMUST00000216543 456 ntTSL 5 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Rps21-201ENSMUST00000059080 394 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Zfp879-202ENSMUST00000109133 2229 ntTSL 5 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Ociad2-202ENSMUST00000200776 2359 ntTSL 3 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Fbxl21-203ENSMUST00000121871 1963 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Hsd3b2-201ENSMUST00000107021 1788 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Gab2-201ENSMUST00000004622 6168 ntAPPRIS P3 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Sphk1-211ENSMUST00000141798 1532 ntAPPRIS P4 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Tmem176b-201ENSMUST00000101429 1238 ntAPPRIS P1 TSL 5 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Gm45799-201ENSMUST00000106785 367 ntAPPRIS ALT2 TSL 3 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Pex11g-202ENSMUST00000111081 666 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 4930456L15Rik-201ENSMUST00000145577 1185 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Hoxd8-203ENSMUST00000151380 557 ntAPPRIS ALT2 TSL 2 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Nfya-203ENSMUST00000159063 1255 ntTSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Gm6916-202ENSMUST00000205523 195 ntBASIC16.7■□□□□ 0.26
Col11a1Q61245 Gm45331-201ENSMUST00000209868 554 ntBASIC16.7■□□□□ 0.26
Col11a1Q61245 AC159474.1-201ENSMUST00000218454 374 ntTSL 3 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Smim11-201ENSMUST00000063641 517 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Pde8b-201ENSMUST00000022192 2517 ntAPPRIS ALT2 TSL 5 BASIC16.7■□□□□ 0.26
Col11a1Q61245 Prnd-202ENSMUST00000110170 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.7■□□□□ 0.26
Col11a1Q61245 Gm45751-201ENSMUST00000210185 1573 ntBASIC16.7■□□□□ 0.26
Col11a1Q61245 Hp1bp3-205ENSMUST00000105827 5155 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Enpp6-202ENSMUST00000119686 1390 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Dmpk-202ENSMUST00000108473 2588 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Smad1-202ENSMUST00000066091 3099 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Cacna2d2-201ENSMUST00000010210 5783 ntAPPRIS ALT2 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Siglecf-201ENSMUST00000012798 2510 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Smoc2-201ENSMUST00000024660 2832 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Spag8-202ENSMUST00000107870 1342 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Agfg1-208ENSMUST00000190052 2991 ntTSL 5 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Lrch3-203ENSMUST00000135193 2794 ntAPPRIS ALT2 TSL 5 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Cwh43-201ENSMUST00000031040 2716 ntAPPRIS P1 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Apoo-204ENSMUST00000113898 784 ntAPPRIS P1 TSL 3 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Gm13392-201ENSMUST00000117708 150 ntBASIC16.69■□□□□ 0.26
Col11a1Q61245 Gm13226-201ENSMUST00000117838 404 ntBASIC16.69■□□□□ 0.26
Col11a1Q61245 Gm15945-201ENSMUST00000146755 810 ntTSL 3 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Gm17420-201ENSMUST00000164753 153 ntBASIC16.69■□□□□ 0.26
Col11a1Q61245 Gm8835-201ENSMUST00000173096 1169 ntBASIC16.69■□□□□ 0.26
Col11a1Q61245 Gm3764-203ENSMUST00000180635 1191 ntTSL 5 BASIC16.69■□□□□ 0.26
Col11a1Q61245 1700094J05Rik-202ENSMUST00000190491 997 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 4930473A02Rik-202ENSMUST00000136793 1409 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Osbpl1a-208ENSMUST00000121888 2674 ntTSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Il6st-208ENSMUST00000184311 2985 ntAPPRIS P2 TSL 5 BASIC16.69■□□□□ 0.26
Col11a1Q61245 Hif3a-201ENSMUST00000037762 2206 ntAPPRIS P3 TSL 1 (best) BASIC16.69■□□□□ 0.26
Col11a1Q61245 Pola2-201ENSMUST00000025752 2424 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Fkbp2-202ENSMUST00000177752 627 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Gm26871-201ENSMUST00000180593 700 ntTSL 3 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Gm5279-201ENSMUST00000199575 745 ntBASIC16.68■□□□□ 0.26
Col11a1Q61245 Apoa5-203ENSMUST00000213878 727 ntTSL 3 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Tmem253-203ENSMUST00000227295 704 ntAPPRIS ALT2 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Kif22-201ENSMUST00000032915 2115 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Mxra8os-201ENSMUST00000097740 687 ntBASIC16.68■□□□□ 0.26
Col11a1Q61245 Bean1-204ENSMUST00000171018 3386 ntAPPRIS P4 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Zranb1-202ENSMUST00000106157 5008 ntAPPRIS P2 TSL 5 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Acss2-201ENSMUST00000029135 2931 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Lzts2-203ENSMUST00000179108 2781 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Gpank1-202ENSMUST00000165306 1518 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Arnt2-201ENSMUST00000085077 6151 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Chst5-201ENSMUST00000034430 2182 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Golga7b-201ENSMUST00000087123 2823 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Dlgap3-202ENSMUST00000106092 2901 ntTSL 5 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Mdp1-201ENSMUST00000002400 1733 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Ankrd23-201ENSMUST00000054665 1964 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Cpne6-203ENSMUST00000165262 2178 ntAPPRIS ALT1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Prcd-202ENSMUST00000116318 799 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Gm12585-201ENSMUST00000117307 290 ntBASIC16.68■□□□□ 0.26
Col11a1Q61245 Rapgef3os2-201ENSMUST00000124374 920 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Gm20499-201ENSMUST00000140374 444 ntAPPRIS P1 TSL 2 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Shisa5-203ENSMUST00000154184 1038 ntTSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Gm44170-201ENSMUST00000203181 549 ntTSL 5 BASIC16.68■□□□□ 0.26
Col11a1Q61245 Olfr286-202ENSMUST00000205305 969 ntBASIC16.68■□□□□ 0.26
Col11a1Q61245 Batf3-201ENSMUST00000027943 801 ntAPPRIS P1 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Upk3bl-201ENSMUST00000006303 1045 ntAPPRIS P2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Adam33-201ENSMUST00000052104 2795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.68■□□□□ 0.26
Col11a1Q61245 Ghdc-201ENSMUST00000017891 2462 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Pdpk1-201ENSMUST00000052462 1832 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Spire2-202ENSMUST00000212404 2158 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Kansl1-204ENSMUST00000106972 5427 ntAPPRIS ALT2 TSL 5 BASIC16.67■□□□□ 0.26
Col11a1Q61245 Gm45667-201ENSMUST00000210380 1316 ntBASIC16.67■□□□□ 0.26
Col11a1Q61245 Dbndd1-201ENSMUST00000176155 1677 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Snx17-201ENSMUST00000031029 2018 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Opn1sw-203ENSMUST00000147483 1426 ntTSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Mprip-203ENSMUST00000108751 4021 ntAPPRIS ALT2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Ccni-201ENSMUST00000058550 2804 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Atg4c-201ENSMUST00000030279 3178 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Lhx3-201ENSMUST00000028302 2223 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Glis1-201ENSMUST00000046005 2906 ntAPPRIS P2 TSL 1 (best) BASIC16.67■□□□□ 0.26
Col11a1Q61245 Mir692-1-201ENSMUST00000102263 109 ntBASIC16.67■□□□□ 0.26
Col11a1Q61245 Pop7-202ENSMUST00000111035 988 ntAPPRIS P1 BASIC16.67■□□□□ 0.26
Retrieved 100 of 76,532 protein–RNA pairs in 38.5 ms