Protein–RNA interactions for Protein: Q3UWA4

Trim40, Tripartite motif-containing protein 40, mousemouse

Predictions only

Length 246 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Trim40Q3UWA4 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Slc8b1-201ENSMUST00000068326 2898 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 2210408F21Rik-213ENSMUST00000153057 652 ntTSL 3 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Rnf13-209ENSMUST00000199041 1062 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Nudt21-204ENSMUST00000212981 1184 ntTSL 3 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Nudt8-202ENSMUST00000025802 787 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Vpreb1-201ENSMUST00000075017 766 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Pih1d1-201ENSMUST00000085375 1185 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Kctd14-205ENSMUST00000206279 2203 ntAPPRIS ALT2 TSL 2 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Med16-201ENSMUST00000105378 3197 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Fubp1-206ENSMUST00000196739 2526 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Plekha1-203ENSMUST00000120441 3777 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Apol8-202ENSMUST00000089450 2498 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Trmt10c-201ENSMUST00000059052 3002 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Nab1-205ENSMUST00000186764 3640 ntAPPRIS ALT1 TSL 5 BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Bbs7-203ENSMUST00000108156 2687 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Mapk9-201ENSMUST00000020634 4675 ntAPPRIS P3 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Mdfic-201ENSMUST00000101663 3431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Mdfic-206ENSMUST00000189359 3435 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Mdfic-207ENSMUST00000190255 3431 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Ube2d1-201ENSMUST00000020085 1431 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
Trim40Q3UWA4 Dtx3-202ENSMUST00000116229 1994 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Pde4dip-202ENSMUST00000090750 8376 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Papd5-203ENSMUST00000119033 4624 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Nagk-203ENSMUST00000113851 1323 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Mesd-201ENSMUST00000094215 4492 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Rbbp8nl-201ENSMUST00000038529 2319 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Ly6h-202ENSMUST00000065417 985 ntAPPRIS ALT1 TSL 2 BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Mrpl43-201ENSMUST00000097715 1213 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Mrpl58-203ENSMUST00000106539 2522 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Krt25-201ENSMUST00000038004 1989 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Snx14-204ENSMUST00000165315 3109 ntAPPRIS P2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Gng2-204ENSMUST00000160013 3826 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Gm8668-201ENSMUST00000120559 1447 ntBASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Pqlc1-204ENSMUST00000129043 1864 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Gm9856-201ENSMUST00000217077 2578 ntBASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.23□□□□□ -0.13
Trim40Q3UWA4 Nat8f3-201ENSMUST00000050780 1821 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Gm4353-201ENSMUST00000111755 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Nup35-201ENSMUST00000028382 1559 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Abhd16b-201ENSMUST00000069649 1775 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Mocos-201ENSMUST00000068006 2884 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Nek7-202ENSMUST00000186017 5258 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Unc93b1-204ENSMUST00000165711 1991 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 St6gal2-202ENSMUST00000086878 2606 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Epha1-201ENSMUST00000073387 3273 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Igfbp1-201ENSMUST00000020704 1525 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Otop3-202ENSMUST00000106543 2369 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Atf4-201ENSMUST00000109605 1724 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Cpne1-202ENSMUST00000109607 3441 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 8030474K03Rik-202ENSMUST00000151231 1940 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 4930405A21Rik-202ENSMUST00000139042 994 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Comtd1-204ENSMUST00000177527 714 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Spata25-201ENSMUST00000017911 786 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Lamtor5-202ENSMUST00000199317 743 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 1700016B15Rik-201ENSMUST00000209027 733 ntBASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Efcab11-207ENSMUST00000223114 1122 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 AC114585.2-202ENSMUST00000228094 426 ntBASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Hist1h2ad-201ENSMUST00000090776 572 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Denr-201ENSMUST00000023869 2339 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Dlgap1-211ENSMUST00000148486 5276 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 2700080J24Rik-201ENSMUST00000205314 1662 ntBASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Synrg-207ENSMUST00000183456 3990 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Brix1-201ENSMUST00000022855 2664 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Zdhhc7-201ENSMUST00000034280 3069 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Rnf31-201ENSMUST00000019443 3485 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Gal3st1-203ENSMUST00000109981 1600 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Sgcd-201ENSMUST00000077221 1617 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Rrp1b-201ENSMUST00000081339 4874 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Camsap2-202ENSMUST00000192001 6329 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Ccdc88c-202ENSMUST00000085096 6313 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Mcrs1-202ENSMUST00000163506 1795 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Gm2788-202ENSMUST00000147173 1390 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
Trim40Q3UWA4 Kcnq2-220ENSMUST00000197015 8031 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 AC162938.1-201ENSMUST00000213140 2323 ntBASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Tle1-204ENSMUST00000102848 3660 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Tmem184c-201ENSMUST00000034030 2678 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Myh14-202ENSMUST00000107899 6390 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Ptk7-201ENSMUST00000044442 4255 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Iqgap1-201ENSMUST00000167377 7444 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 D6Ertd527e-204ENSMUST00000204927 2218 ntAPPRIS P3 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Bnipl-202ENSMUST00000107195 1810 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Fam229a-201ENSMUST00000106043 558 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Rab3d-202ENSMUST00000119055 694 ntTSL 3 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Rnf170-208ENSMUST00000153528 1026 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Tnnt2-212ENSMUST00000189732 1123 ntAPPRIS ALT2 TSL 5 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Gm40977-203ENSMUST00000222324 886 ntTSL 2 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 C530025M09Rik-201ENSMUST00000099264 690 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Srsf10-202ENSMUST00000097844 3055 ntAPPRIS ALT1 TSL 2 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Gata4-201ENSMUST00000067417 3400 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Tle3-201ENSMUST00000034820 4646 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 5033426O07Rik-202ENSMUST00000212635 2110 ntTSL 5 BASIC14.21□□□□□ -0.13
Trim40Q3UWA4 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
Retrieved 100 of 76,532 protein–RNA pairs in 29.2 ms