Protein–RNA interactions for Protein: Q3U1J4

Ddb1, DNA damage-binding protein 1, mousemouse

Known RBP Predictions only

Length 1,140 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Ddb1Q3U1J4 Slc35c2-201ENSMUST00000017808 1843 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Neu4-202ENSMUST00000190212 1719 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Ip6k2-206ENSMUST00000193560 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Map3k10-201ENSMUST00000036453 3682 ntAPPRIS P2 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Abcb10-201ENSMUST00000075578 4306 ntAPPRIS P1 TSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Sh3gl2-203ENSMUST00000107188 2286 ntTSL 1 (best) BASIC19.11■□□□□ 0.65
Ddb1Q3U1J4 Gm8131-201ENSMUST00000213783 1570 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Mis12-206ENSMUST00000164220 1416 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gas6-201ENSMUST00000033828 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Vsig10l-204ENSMUST00000203769 2473 ntAPPRIS P2 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Rdm1-201ENSMUST00000010506 1124 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Sec11a-202ENSMUST00000117383 1094 ntTSL 2 BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Sec11a-203ENSMUST00000119980 903 ntTSL 2 BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Cd209g-201ENSMUST00000130372 1169 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm17150-201ENSMUST00000165577 381 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Ssty1-201ENSMUST00000180056 699 ntAPPRIS P1 BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm29310-201ENSMUST00000185468 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21825-201ENSMUST00000185728 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm29109-201ENSMUST00000185895 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21896-201ENSMUST00000186520 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21873-201ENSMUST00000186728 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21794-201ENSMUST00000187056 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21880-201ENSMUST00000187275 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21826-201ENSMUST00000187451 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21198-201ENSMUST00000188393 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21749-201ENSMUST00000189343 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21901-201ENSMUST00000189568 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm29424-201ENSMUST00000189716 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm28599-201ENSMUST00000189838 694 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21867-201ENSMUST00000189917 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm29269-201ENSMUST00000190087 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21722-201ENSMUST00000190153 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm28423-201ENSMUST00000190701 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21899-201ENSMUST00000190745 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21910-201ENSMUST00000191163 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21849-201ENSMUST00000191571 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm28678-201ENSMUST00000191593 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm20910-201ENSMUST00000193268 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm21871-201ENSMUST00000194621 696 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 1700028J19Rik-203ENSMUST00000206686 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm7390-201ENSMUST00000212452 1216 ntBASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Mrps21-202ENSMUST00000072587 405 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Rec114-201ENSMUST00000098674 883 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Pkn2-201ENSMUST00000043812 6207 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Eps8-201ENSMUST00000058210 4567 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Adgrl1-207ENSMUST00000141158 8181 ntTSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Zfp647-201ENSMUST00000048854 1608 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Wdtc1-201ENSMUST00000043305 4191 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Eif4a3-201ENSMUST00000026667 1509 ntAPPRIS P1 TSL 1 (best) BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Fam133b-205ENSMUST00000197082 1943 ntAPPRIS ALT2 TSL 5 BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Gm20604-201ENSMUST00000174651 2795 ntAPPRIS P1 TSL 2 BASIC19.1■□□□□ 0.65
Ddb1Q3U1J4 Klhl31-201ENSMUST00000057781 6494 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Kcnq2-201ENSMUST00000016491 3067 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Sesn3-201ENSMUST00000034507 1827 ntTSL 5 BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Lamp2-201ENSMUST00000016678 1769 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Ntf3-202ENSMUST00000112244 1399 ntAPPRIS ALT1 TSL 3 BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 A230103J11Rik-202ENSMUST00000156084 2086 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Nkpd1-201ENSMUST00000078908 2753 ntAPPRIS P2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Exoc8-201ENSMUST00000098312 4598 ntAPPRIS P1 BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Mir6420-201ENSMUST00000185032 102 ntBASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Gm10766-202ENSMUST00000194123 606 ntBASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Gm36236-201ENSMUST00000220780 701 ntTSL 3 BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Nupr1-201ENSMUST00000032961 829 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Ggn-201ENSMUST00000033886 588 ntTSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Txndc11-201ENSMUST00000038424 3095 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Slc25a29-201ENSMUST00000021693 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Cdx2-201ENSMUST00000031650 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Mafg-201ENSMUST00000058162 4923 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Cbx2-201ENSMUST00000026662 3807 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Zfp13-202ENSMUST00000115516 2104 ntAPPRIS ALT2 TSL 1 (best) BASIC19.09■□□□□ 0.65
Ddb1Q3U1J4 Matr3-214ENSMUST00000190029 2845 ntAPPRIS P1 TSL 5 BASIC19.08■□□□□ 0.65
Ddb1Q3U1J4 1600012H06Rik-201ENSMUST00000052691 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddb1Q3U1J4 Ppfia1-201ENSMUST00000168134 5181 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddb1Q3U1J4 Mettl7a3-201ENSMUST00000075420 1618 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddb1Q3U1J4 Usp6nl-202ENSMUST00000114937 7484 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.65
Ddb1Q3U1J4 Defb30-203ENSMUST00000111208 503 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Defb30-204ENSMUST00000111209 721 ntAPPRIS ALT2 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Gm6222-201ENSMUST00000120787 396 ntBASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Nudcd2-203ENSMUST00000127382 727 ntTSL 2 BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Tex22-203ENSMUST00000146107 1130 ntAPPRIS P1 TSL 2 BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Gm27631-201ENSMUST00000184163 466 ntBASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Il31-203ENSMUST00000198901 984 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 2310016G11Rik-202ENSMUST00000209111 733 ntTSL 3 BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Tlcd2-201ENSMUST00000043598 1153 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Pdlim7-202ENSMUST00000069929 899 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Tomm34-201ENSMUST00000018466 2302 ntAPPRIS P3 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Slc22a1-201ENSMUST00000024596 1994 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Smad3-201ENSMUST00000034973 5090 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Cd1d1-202ENSMUST00000063869 1421 ntTSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Slc35e3-201ENSMUST00000079041 3489 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.64
Ddb1Q3U1J4 Zranb2-203ENSMUST00000106058 2924 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Capn10-201ENSMUST00000027488 2902 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 A4galt-202ENSMUST00000164614 2128 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Ercc1-201ENSMUST00000003645 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Slc27a4-201ENSMUST00000080065 4054 ntAPPRIS P1 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Tmem214-202ENSMUST00000201203 6110 ntAPPRIS P2 TSL 1 (best) BASIC19.07■□□□□ 0.64
Ddb1Q3U1J4 Nxf1-202ENSMUST00000010248 748 ntTSL 1 (best) BASIC19.07■□□□□ 0.64
Retrieved 100 of 76,532 protein–RNA pairs in 51.5 ms