Protein–RNA interactions for Protein: P97436

Nkx3-1, Homeobox protein Nkx-3.1, mousemouse

Predictions only

Length 237 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Nkx3-1P97436 Xrcc1-205ENSMUST00000205573 2528 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Agpat1-202ENSMUST00000114140 1941 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Agpat1-208ENSMUST00000174595 1911 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Stx6-201ENSMUST00000027743 4589 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Tssc4-201ENSMUST00000060433 1519 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Thap6-204ENSMUST00000193925 1337 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Crem-234ENSMUST00000154470 1996 ntTSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Rhot1-201ENSMUST00000017831 3029 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Ddx39-202ENSMUST00000109810 1794 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Kbtbd2-201ENSMUST00000114321 3868 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Commd10-201ENSMUST00000049388 1561 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Cdh24-201ENSMUST00000067784 3489 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Kctd15-203ENSMUST00000108070 2409 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Gstm7-201ENSMUST00000004137 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
Nkx3-1P97436 Iqck-202ENSMUST00000106547 2026 ntAPPRIS P2 TSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Dpys-201ENSMUST00000022915 2466 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Pcdha2-201ENSMUST00000115662 5361 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Atxn7l3-201ENSMUST00000073234 3688 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Dmpk-203ENSMUST00000108474 2591 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Zbtb11-201ENSMUST00000050248 4920 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Efcab8-203ENSMUST00000175856 1703 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Eif4g1-201ENSMUST00000044783 5444 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Slc31a2-203ENSMUST00000107468 743 ntAPPRIS ALT1 TSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Slpi-201ENSMUST00000109367 876 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Cbx6-201ENSMUST00000109623 996 ntTSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Gm27430-201ENSMUST00000184585 107 ntBASIC13.06□□□□□ -0.32
Nkx3-1P97436 Gm27321-201ENSMUST00000185021 205 ntBASIC13.06□□□□□ -0.32
Nkx3-1P97436 Mir7023-201ENSMUST00000185093 64 ntBASIC13.06□□□□□ -0.32
Nkx3-1P97436 Gm44333-201ENSMUST00000197168 107 ntBASIC13.06□□□□□ -0.32
Nkx3-1P97436 Gm42560-201ENSMUST00000201216 1023 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Tmem86b-204ENSMUST00000206610 522 ntTSL 3 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Idh2-207ENSMUST00000206714 392 ntTSL 3 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 CT030684.1-201ENSMUST00000227292 914 ntBASIC13.06□□□□□ -0.32
Nkx3-1P97436 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Stard7-201ENSMUST00000110374 1530 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Ap3s1-201ENSMUST00000025357 1520 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Arhgef40-216ENSMUST00000182760 5130 ntAPPRIS ALT2 TSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Uvrag-201ENSMUST00000037968 5157 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Mef2b-205ENSMUST00000163756 1337 ntAPPRIS P3 TSL 2 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Cap1-203ENSMUST00000106257 2768 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Tmx4-201ENSMUST00000038228 5488 ntAPPRIS P2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Adgrl1-210ENSMUST00000152978 5734 ntTSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Wwc2-201ENSMUST00000057561 8678 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Galnt18-201ENSMUST00000049430 2575 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Spred1-201ENSMUST00000028829 6016 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Dnajc1-202ENSMUST00000091418 5070 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Gm9867-201ENSMUST00000192212 2647 ntBASIC13.06□□□□□ -0.32
Nkx3-1P97436 Cyp46a1-201ENSMUST00000021684 2118 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Fmnl3-201ENSMUST00000081224 4137 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Cbl-201ENSMUST00000037644 4901 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Ctage5-213ENSMUST00000176464 4434 ntTSL 5 BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Pak2-201ENSMUST00000023467 5741 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
Nkx3-1P97436 Eva1c-203ENSMUST00000099548 1948 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Dlx4os-201ENSMUST00000156477 1664 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Kif21a-201ENSMUST00000067205 6307 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 1700022A21Rik-202ENSMUST00000182910 1448 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 P2rx4-201ENSMUST00000031429 2702 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Tubgcp4-202ENSMUST00000110657 1992 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Srgn-204ENSMUST00000160987 1727 ntAPPRIS P1 TSL 3 BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Cacng2-201ENSMUST00000019290 5510 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Tll1-201ENSMUST00000066166 4767 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Dffb-201ENSMUST00000030893 2093 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm22065-201ENSMUST00000103753 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm22066-201ENSMUST00000103761 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24932-201ENSMUST00000103763 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24115-201ENSMUST00000103799 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm22190-201ENSMUST00000103827 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm22191-201ENSMUST00000103831 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24721-201ENSMUST00000103849 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm28018-201ENSMUST00000103869 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm26399-201ENSMUST00000103937 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 9130230N09Rik-201ENSMUST00000174568 663 ntTSL 3 BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Hsf4-207ENSMUST00000174837 1251 ntTSL 5 BASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm25349-201ENSMUST00000177728 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm23616-201ENSMUST00000177797 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm25871-201ENSMUST00000177816 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24752-201ENSMUST00000178240 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24496-201ENSMUST00000178287 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm25649-201ENSMUST00000178476 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm25548-201ENSMUST00000178681 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm23147-201ENSMUST00000178841 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm26095-201ENSMUST00000179270 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm22171-201ENSMUST00000179283 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm23936-201ENSMUST00000179354 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm22619-201ENSMUST00000179516 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm25255-201ENSMUST00000179579 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24755-201ENSMUST00000179691 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm26506-201ENSMUST00000179692 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm25086-201ENSMUST00000179931 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm23243-201ENSMUST00000180047 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24659-201ENSMUST00000180212 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm24169-201ENSMUST00000180244 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm23689-201ENSMUST00000180354 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm27359-201ENSMUST00000184153 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm27785-201ENSMUST00000184268 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm27466-201ENSMUST00000184396 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm27703-201ENSMUST00000184836 110 ntBASIC13.05□□□□□ -0.32
Nkx3-1P97436 Gm10253-201ENSMUST00000194270 940 ntBASIC13.05□□□□□ -0.32
Retrieved 100 of 76,532 protein–RNA pairs in 54.6 ms