Protein–RNA interactions for Protein: P55288

Cdh11, Cadherin-11, mousemouse

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Cdh11P55288 Ppp2r1a-201ENSMUST00000007708 2410 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Lrrc25-201ENSMUST00000052437 1313 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Coq6-202ENSMUST00000110276 1776 ntAPPRIS P2 TSL 5 BASIC13.83□□□□□ -0.2
Cdh11P55288 Trp53i11-201ENSMUST00000090554 2654 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Tead2-203ENSMUST00000107801 3396 ntAPPRIS P3 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Ltv1-201ENSMUST00000019950 2297 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Csad-201ENSMUST00000023805 2265 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Col7a1-201ENSMUST00000026740 9198 ntAPPRIS P1 TSL 1 (best) BASIC13.83□□□□□ -0.2
Cdh11P55288 Grn-201ENSMUST00000049460 2340 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Cdr2l-201ENSMUST00000053288 3700 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Rnf146-201ENSMUST00000037548 4402 ntAPPRIS P1 TSL 2 BASIC13.82□□□□□ -0.2
Cdh11P55288 Gm8784-201ENSMUST00000222096 1435 ntBASIC13.82□□□□□ -0.2
Cdh11P55288 Sema6c-213ENSMUST00000168321 3553 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Brpf1-209ENSMUST00000204198 4307 ntTSL 5 BASIC13.82□□□□□ -0.2
Cdh11P55288 Ss18l1-201ENSMUST00000041126 4343 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 2810039B14Rik-201ENSMUST00000183928 1459 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Hars-201ENSMUST00000001416 1987 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Arhgap44-203ENSMUST00000093002 3982 ntAPPRIS ALT2 TSL 5 BASIC13.82□□□□□ -0.2
Cdh11P55288 Mpped1-201ENSMUST00000046168 3265 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Psmd4-203ENSMUST00000117355 1756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Ten1-201ENSMUST00000021130 902 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Olfr632-201ENSMUST00000098189 954 ntAPPRIS P1 BASIC13.82□□□□□ -0.2
Cdh11P55288 Dnajc7-201ENSMUST00000014339 2330 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Fkbp14-202ENSMUST00000117375 1830 ntTSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Srrm3-204ENSMUST00000144211 3932 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Cyb5r3-201ENSMUST00000018186 2422 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Hyou1-204ENSMUST00000160902 3374 ntAPPRIS P1 TSL 5 BASIC13.82□□□□□ -0.2
Cdh11P55288 Ifrd1-201ENSMUST00000001672 3378 ntAPPRIS P1 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Ubn2-201ENSMUST00000039127 4243 ntAPPRIS ALT2 TSL 1 (best) BASIC13.82□□□□□ -0.2
Cdh11P55288 Kcna1-202ENSMUST00000203094 3150 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdh11P55288 Slc6a9-201ENSMUST00000030269 3479 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Apoa5-201ENSMUST00000034584 2312 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Slc44a3-201ENSMUST00000039197 2620 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Npcd-202ENSMUST00000089299 1453 ntAPPRIS P4 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Ebf3-208ENSMUST00000210774 2994 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Mcfd2-201ENSMUST00000024963 1823 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Trmt112-202ENSMUST00000116551 985 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 4930570G19Rik-204ENSMUST00000149387 986 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Dgcr6-208ENSMUST00000153123 920 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Sec61g-206ENSMUST00000166950 754 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Tmem255b-201ENSMUST00000167071 1138 ntTSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Sec61g-207ENSMUST00000178855 779 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Washc3-203ENSMUST00000182183 838 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Cdh11P55288 Smim22-208ENSMUST00000185147 399 ntAPPRIS ALT2 TSL 2 BASIC13.81□□□□□ -0.2
Cdh11P55288 Bag2-203ENSMUST00000187602 378 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdh11P55288 Gm13830-205ENSMUST00000201195 1155 ntBASIC13.81□□□□□ -0.2
Cdh11P55288 Hmgb1-rs17-201ENSMUST00000210634 972 ntBASIC13.81□□□□□ -0.2
Cdh11P55288 Bex3-201ENSMUST00000053540 930 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Dnajb8-201ENSMUST00000061866 990 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdh11P55288 Gm10190-201ENSMUST00000086549 324 ntAPPRIS P1 BASIC13.81□□□□□ -0.2
Cdh11P55288 Pofut2-201ENSMUST00000020493 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Syt3-201ENSMUST00000118831 2627 ntAPPRIS P1 TSL 5 BASIC13.81□□□□□ -0.2
Cdh11P55288 Scyl1-201ENSMUST00000025890 2637 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Hnrnpm-201ENSMUST00000087582 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Chst13-201ENSMUST00000070890 1653 ntAPPRIS P1 TSL 3 BASIC13.81□□□□□ -0.2
Cdh11P55288 Cd5l-201ENSMUST00000015998 2036 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Exoc6-201ENSMUST00000066439 2729 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Etl4-208ENSMUST00000114614 5898 ntAPPRIS ALT2 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Dennd4c-201ENSMUST00000045512 5648 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Cdh11P55288 Sidt2-201ENSMUST00000038488 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Zfp703-202ENSMUST00000154256 3152 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Patz1-202ENSMUST00000093402 3173 ntTSL 2 BASIC13.81□□□□□ -0.2
Cdh11P55288 Mybl1-201ENSMUST00000088658 4980 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Tbc1d22b-201ENSMUST00000048677 3592 ntAPPRIS P1 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Dhx34-203ENSMUST00000119102 4310 ntAPPRIS ALT2 TSL 5 BASIC13.81□□□□□ -0.2
Cdh11P55288 Cttn-202ENSMUST00000103079 3286 ntAPPRIS P3 TSL 1 (best) BASIC13.81□□□□□ -0.2
Cdh11P55288 Rbm7-202ENSMUST00000213276 2629 ntTSL 2 BASIC13.8□□□□□ -0.2
Cdh11P55288 Rnf44-211ENSMUST00000134862 3797 ntTSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Gm5357-201ENSMUST00000212720 1924 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Anxa4-201ENSMUST00000001187 2002 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Mbtd1-202ENSMUST00000063718 3785 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Rhoc-202ENSMUST00000106787 959 ntAPPRIS P1 TSL 2 BASIC13.8□□□□□ -0.2
Cdh11P55288 Enkd1-201ENSMUST00000013299 1275 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Rbmx-206ENSMUST00000143310 1296 ntTSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Gm18733-201ENSMUST00000173950 856 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 Gm25745-201ENSMUST00000174945 133 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 Gm7507-201ENSMUST00000183053 1008 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 Lat-206ENSMUST00000206793 1215 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Gm6376-201ENSMUST00000209407 580 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 AC161829.1-201ENSMUST00000220298 281 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 AC127349.1-201ENSMUST00000224590 266 ntBASIC13.8□□□□□ -0.2
Cdh11P55288 Cd300c-201ENSMUST00000061637 690 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Cd300c-202ENSMUST00000092466 700 ntAPPRIS P5 TSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Dcakd-201ENSMUST00000021313 1744 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Mis12-201ENSMUST00000048807 3003 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Raf1-201ENSMUST00000000451 3070 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Gm2694-204ENSMUST00000181898 1303 ntTSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Ahsa1-201ENSMUST00000021425 1377 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Ubb-201ENSMUST00000019649 1499 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Mtcl1-211ENSMUST00000177034 5441 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Gm128-201ENSMUST00000090815 1959 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Dmkn-202ENSMUST00000054427 2034 ntAPPRIS ALT2 TSL 5 BASIC13.8□□□□□ -0.2
Cdh11P55288 Rtn1-201ENSMUST00000021497 1544 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.2
Cdh11P55288 Zbtb33-202ENSMUST00000115142 2567 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdh11P55288 Nfe2l1-201ENSMUST00000081775 4654 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdh11P55288 Rubcn-201ENSMUST00000040986 5257 ntAPPRIS P3 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdh11P55288 Rnf152-201ENSMUST00000058688 8492 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdh11P55288 Maea-201ENSMUST00000114449 2193 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Cdh11P55288 Itm2c-201ENSMUST00000027425 2230 ntAPPRIS P1 TSL 1 (best) BASIC13.79□□□□□ -0.2
Retrieved 100 of 76,532 protein–RNA pairs in 44.2 ms