Protein–RNA interactions for Protein: P13297

Msx1, Homeobox protein MSX-1, mousemouse

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Msx1P13297 Ssfa2-202ENSMUST00000111785 5168 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Gm2109-201ENSMUST00000189326 1409 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Tjp3-201ENSMUST00000045744 3024 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Ltc4s-202ENSMUST00000102772 649 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Ntpcr-205ENSMUST00000143504 520 ntTSL 5 BASIC14.36□□□□□ -0.11
Msx1P13297 Gm15635-203ENSMUST00000148972 554 ntTSL 2 BASIC14.36□□□□□ -0.11
Msx1P13297 Gm44492-201ENSMUST00000197012 141 ntBASIC14.36□□□□□ -0.11
Msx1P13297 Ccl11-201ENSMUST00000000342 1082 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Rcor1-202ENSMUST00000116388 2720 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Max-202ENSMUST00000110395 1942 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Dsg2-202ENSMUST00000120102 3590 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Zgpat-201ENSMUST00000029105 2293 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Cxxc5-201ENSMUST00000060722 2271 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Rab6a-202ENSMUST00000098252 3110 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Tnfrsf13c-202ENSMUST00000109535 1983 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
Msx1P13297 Celf5-203ENSMUST00000120508 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 6430710C18Rik-203ENSMUST00000136807 1540 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
Msx1P13297 Snx18-201ENSMUST00000109241 4447 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Hoxb5-201ENSMUST00000049272 1895 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Gm31774-201ENSMUST00000212910 1366 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Celf1-206ENSMUST00000111451 4678 ntAPPRIS ALT1 TSL 5 BASIC14.35□□□□□ -0.11
Msx1P13297 Rnf111-201ENSMUST00000034739 4880 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Gm13337-201ENSMUST00000119183 1594 ntBASIC14.35□□□□□ -0.11
Msx1P13297 Rab17-204ENSMUST00000131428 1557 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Snx8-201ENSMUST00000031539 2627 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 E530011L22Rik-201ENSMUST00000181325 5282 ntBASIC14.35□□□□□ -0.11
Msx1P13297 Hspa1b-201ENSMUST00000172753 2803 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Msx1P13297 Arl5b-202ENSMUST00000069870 6981 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Gna15-201ENSMUST00000043709 1962 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Smpd4-221ENSMUST00000170996 1619 ntTSL 5 BASIC14.35□□□□□ -0.11
Msx1P13297 Ube2v2-202ENSMUST00000115776 1236 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Gm13375-201ENSMUST00000126967 854 ntTSL 2 BASIC14.35□□□□□ -0.11
Msx1P13297 Bcl2l2-204ENSMUST00000172844 498 ntTSL 5 BASIC14.35□□□□□ -0.11
Msx1P13297 Znrf1-213ENSMUST00000174333 515 ntTSL 3 BASIC14.35□□□□□ -0.11
Msx1P13297 BC022687-202ENSMUST00000177808 1207 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Ndufv2-201ENSMUST00000024909 927 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Sbk2-201ENSMUST00000032598 1139 ntAPPRIS P1 TSL 3 BASIC14.35□□□□□ -0.11
Msx1P13297 Rgs10-201ENSMUST00000033133 880 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Rpl28-202ENSMUST00000078432 772 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Msx1P13297 Rnf220-203ENSMUST00000102690 1842 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Ppp1r2-201ENSMUST00000060188 4078 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Gm12355-201ENSMUST00000104933 1311 ntAPPRIS P1 BASIC14.35□□□□□ -0.11
Msx1P13297 Chuk-202ENSMUST00000119591 3481 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Gm16201-202ENSMUST00000139218 2330 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Emx2-201ENSMUST00000062216 2916 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
Msx1P13297 Tapt1-201ENSMUST00000055128 3513 ntAPPRIS P1 TSL 5 BASIC14.35□□□□□ -0.11
Msx1P13297 Lancl1-203ENSMUST00000119559 1385 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Tex264-201ENSMUST00000046735 1391 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Iqcd-201ENSMUST00000069259 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Sigirr-201ENSMUST00000097958 1990 ntAPPRIS P2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Slc33a1-203ENSMUST00000161659 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Lgr6-202ENSMUST00000137968 2820 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Kif12-205ENSMUST00000156618 2258 ntAPPRIS ALT2 TSL 5 BASIC14.34□□□□□ -0.11
Msx1P13297 E430018J23Rik-201ENSMUST00000074249 2063 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Myod1-201ENSMUST00000072514 1861 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Naa15-201ENSMUST00000029303 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Ddit4l-201ENSMUST00000053855 2722 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Bclaf3-201ENSMUST00000057180 2513 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Tulp3-201ENSMUST00000001562 3374 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Gm45799-202ENSMUST00000106786 409 ntAPPRIS ALT2 TSL 3 BASIC14.34□□□□□ -0.11
Msx1P13297 Slc38a6-204ENSMUST00000126488 589 ntTSL 5 BASIC14.34□□□□□ -0.11
Msx1P13297 Gm16183-201ENSMUST00000127527 1193 ntTSL 5 BASIC14.34□□□□□ -0.11
Msx1P13297 Gm10605-201ENSMUST00000182342 665 ntTSL 3 BASIC14.34□□□□□ -0.11
Msx1P13297 Avpi1-201ENSMUST00000018965 1044 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 AC155714.1-201ENSMUST00000214033 956 ntTSL 5 BASIC14.34□□□□□ -0.11
Msx1P13297 Pcdha3-201ENSMUST00000192503 5332 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Rprd1a-201ENSMUST00000046206 4297 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Btbd1-201ENSMUST00000026093 3001 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Abhd3-203ENSMUST00000117828 1962 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Crhbp-202ENSMUST00000221025 1779 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Cog8-202ENSMUST00000095517 4476 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Osbpl1a-206ENSMUST00000121774 2931 ntTSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Slc30a2-201ENSMUST00000081094 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Crk-201ENSMUST00000017920 3642 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Nap1l4-209ENSMUST00000209098 2281 ntAPPRIS P1 TSL 1 (best) BASIC14.34□□□□□ -0.11
Msx1P13297 Pxk-205ENSMUST00000225653 2765 ntAPPRIS P2 BASIC14.34□□□□□ -0.11
Msx1P13297 Klc4-201ENSMUST00000003642 2322 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Msx1P13297 A830009L08Rik-201ENSMUST00000181054 2807 ntTSL 1 (best) BASIC14.33□□□□□ -0.11
Msx1P13297 Lck-202ENSMUST00000102596 2111 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Msx1P13297 Prmt1-203ENSMUST00000207370 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Msx1P13297 Ttll11-202ENSMUST00000112976 3077 ntAPPRIS ALT2 TSL 5 BASIC14.33□□□□□ -0.11
Msx1P13297 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.11
Msx1P13297 Adnp-201ENSMUST00000057793 4917 ntAPPRIS P1 TSL 5 BASIC14.33□□□□□ -0.12
Msx1P13297 Eda-206ENSMUST00000113779 4955 ntAPPRIS P3 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Miip-206ENSMUST00000172710 1769 ntAPPRIS P2 TSL 5 BASIC14.33□□□□□ -0.12
Msx1P13297 Mrpl55-204ENSMUST00000108786 757 ntTSL 2 BASIC14.33□□□□□ -0.12
Msx1P13297 Gm14722-201ENSMUST00000118943 689 ntBASIC14.33□□□□□ -0.12
Msx1P13297 Gm11508-201ENSMUST00000129337 440 ntTSL 2 BASIC14.33□□□□□ -0.12
Msx1P13297 Slc7a10-203ENSMUST00000135452 629 ntTSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Spr-ps1-202ENSMUST00000186281 706 ntTSL 2 BASIC14.33□□□□□ -0.12
Msx1P13297 Cyb561d2-205ENSMUST00000195235 1162 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Gm7787-201ENSMUST00000216858 688 ntBASIC14.33□□□□□ -0.12
Msx1P13297 Gm10701-201ENSMUST00000098926 906 ntTSL 2 BASIC14.33□□□□□ -0.12
Msx1P13297 Rhcg-201ENSMUST00000032766 2090 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Serpinf1-201ENSMUST00000000769 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Msx1P13297 Pdcl3-201ENSMUST00000027247 3914 ntAPPRIS P1 TSL 1 (best) BASIC14.33□□□□□ -0.12
Retrieved 100 of 76,532 protein–RNA pairs in 32.1 ms