Protein–RNA interactions for Protein: O35235

Tnfsf11, Tumor necrosis factor ligand superfamily member 11, mousemouse

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Tnfsf11O35235 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC11.85□□□□□ -0.51
Tnfsf11O35235 Selenon-201ENSMUST00000060435 3445 ntAPPRIS P1 TSL 5 BASIC11.85□□□□□ -0.51
Tnfsf11O35235 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC11.85□□□□□ -0.51
Tnfsf11O35235 Pitx2-203ENSMUST00000106382 1757 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Mfsd10-203ENSMUST00000114331 1754 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Gm9913-201ENSMUST00000066157 2793 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Pgd-201ENSMUST00000084124 2218 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Trappc9-203ENSMUST00000168191 3127 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Nt5c2-203ENSMUST00000172239 3148 ntTSL 5 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Slc4a5-202ENSMUST00000113899 5039 ntAPPRIS ALT2 TSL 5 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Fars2-205ENSMUST00000224241 1665 ntAPPRIS P1 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Zfyve27-201ENSMUST00000099443 2573 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Ncln-202ENSMUST00000118498 2841 ntAPPRIS ALT1 TSL 5 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Ankrd61-202ENSMUST00000110717 1498 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Gm11748-201ENSMUST00000153825 1498 ntTSL 2 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Cryl1-201ENSMUST00000022517 1497 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Arf1-201ENSMUST00000061242 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Pccb-204ENSMUST00000149322 2188 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Lifr-201ENSMUST00000067190 4143 ntAPPRIS P3 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 L2hgdh-201ENSMUST00000021370 3340 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 2210408F21Rik-204ENSMUST00000136571 478 ntTSL 3 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Snx12-204ENSMUST00000156473 1114 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Surf1-201ENSMUST00000015934 1173 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Gm9484-201ENSMUST00000195892 1159 ntBASIC11.84□□□□□ -0.51
Tnfsf11O35235 1810010D01Rik-204ENSMUST00000208788 889 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 AC127302.2-201ENSMUST00000215212 268 ntBASIC11.84□□□□□ -0.51
Tnfsf11O35235 AC114585.2-202ENSMUST00000228094 426 ntBASIC11.84□□□□□ -0.51
Tnfsf11O35235 3110040N11Rik-201ENSMUST00000026092 887 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Pldi-201ENSMUST00000036304 853 ntTSL 2 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Prok1-201ENSMUST00000049852 813 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 4833445I07Rik-201ENSMUST00000193193 1642 ntBASIC11.84□□□□□ -0.51
Tnfsf11O35235 Trim11-203ENSMUST00000108810 2301 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Gm33195-201ENSMUST00000220827 2337 ntTSL 5 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Col5a1-201ENSMUST00000028280 8406 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Med22-202ENSMUST00000102899 3506 ntAPPRIS ALT1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 C230004F18Rik-203ENSMUST00000137153 2138 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Wdr1-205ENSMUST00000201260 2139 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 A330035P11Rik-202ENSMUST00000144926 3074 ntTSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Etv3-202ENSMUST00000119109 5309 ntAPPRIS P2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Prkcz2-201ENSMUST00000206136 1756 ntBASIC11.84□□□□□ -0.51
Tnfsf11O35235 Slc24a3-201ENSMUST00000081121 1788 ntAPPRIS P2 TSL 5 BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Mme-206ENSMUST00000194150 3345 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Cobll1-201ENSMUST00000090896 4867 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Tbx15-201ENSMUST00000029462 3566 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Ghr-201ENSMUST00000069451 4175 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Kpnb1-201ENSMUST00000001479 5894 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Fbxo28-201ENSMUST00000051431 4925 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Kctd3-201ENSMUST00000085678 3706 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Gnl3-201ENSMUST00000037739 1947 ntAPPRIS P1 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Tmem40-202ENSMUST00000112946 1554 ntAPPRIS ALT2 TSL 1 (best) BASIC11.84□□□□□ -0.51
Tnfsf11O35235 Abl2-201ENSMUST00000027888 3549 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.51
Tnfsf11O35235 AC162938.1-201ENSMUST00000213140 2323 ntBASIC11.83□□□□□ -0.51
Tnfsf11O35235 Rspry1-207ENSMUST00000212729 2800 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Stard6-201ENSMUST00000114959 1496 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Prkcsh-205ENSMUST00000216344 2228 ntAPPRIS P3 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Dnajb1-201ENSMUST00000005620 2996 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Lrp11-203ENSMUST00000130590 3220 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Arid4b-203ENSMUST00000110534 5864 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Yod1-201ENSMUST00000049813 6128 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Spns1-202ENSMUST00000119754 2001 ntTSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Fndc11-202ENSMUST00000108835 1154 ntAPPRIS P1 TSL 2 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Gm3764-209ENSMUST00000181550 1093 ntTSL 3 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Rsu1-209ENSMUST00000191959 720 ntTSL 3 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 6530437J22Rik-201ENSMUST00000207515 773 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Stard10-211ENSMUST00000210192 1258 ntAPPRIS P1 TSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Bcl2l12-201ENSMUST00000003290 1075 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Scap-201ENSMUST00000098350 4227 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Card9-202ENSMUST00000100303 1947 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Slc10a3-202ENSMUST00000073067 1910 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Synj1-203ENSMUST00000121759 7090 ntAPPRIS P4 TSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Tbc1d4-210ENSMUST00000162617 4762 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Sh2b1-205ENSMUST00000205733 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Myh14-201ENSMUST00000048102 6457 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Celf3-201ENSMUST00000029784 2744 ntAPPRIS P2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Ttpa-202ENSMUST00000117632 3123 ntTSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 4930459C07Rik-202ENSMUST00000219638 1805 ntTSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Tsc22d1-202ENSMUST00000048371 4818 ntTSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Mctp1-204ENSMUST00000125209 4715 ntAPPRIS ALT2 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Ppp1r11-201ENSMUST00000040402 1599 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Lin54-201ENSMUST00000046154 4451 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Tcp11-202ENSMUST00000043925 1746 ntAPPRIS ALT2 TSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Specc1-209ENSMUST00000201671 2523 ntTSL 5 BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Hyou1-201ENSMUST00000066601 4432 ntAPPRIS P1 TSL 1 (best) BASIC11.83□□□□□ -0.52
Tnfsf11O35235 Aggf1-201ENSMUST00000022189 3249 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Slc8a2-202ENSMUST00000211649 5261 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Cry2-202ENSMUST00000111278 2160 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Rtfdc1-201ENSMUST00000029005 2173 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Synm-201ENSMUST00000051389 6953 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Vps26b-201ENSMUST00000034470 3575 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Slc41a1-201ENSMUST00000086559 4697 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Acbd5-215ENSMUST00000228050 4804 ntAPPRIS ALT2 BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Ccdc27-201ENSMUST00000047207 2089 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Emb-201ENSMUST00000022242 2923 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Map7d1-201ENSMUST00000061143 3351 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Mthfsl-201ENSMUST00000113110 801 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Mthfs-203ENSMUST00000118870 705 ntTSL 3 BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Asnsd1-202ENSMUST00000123519 983 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Oaz2-204ENSMUST00000136166 700 ntTSL 5 BASIC11.82□□□□□ -0.52
Tnfsf11O35235 Prlh-201ENSMUST00000166281 276 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
Retrieved 100 of 76,532 protein–RNA pairs in 54.2 ms