Protein–RNA interactions for Protein: F7BJK1

Pcdh1, Protocadherin 1 (Fragment), mousemouse

Predictions only

Length 1,077 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Pcdh1F7BJK1 A430033K04Rik-201ENSMUST00000032590 1109 ntTSL 5 BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Znhit1-202ENSMUST00000085941 740 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Usp27x-203ENSMUST00000191497 4273 ntAPPRIS P1 TSL 2 BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Cdk2-202ENSMUST00000026416 2406 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Pum2-202ENSMUST00000111122 6311 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Etl4-207ENSMUST00000114610 2863 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Gm5922-201ENSMUST00000214963 1723 ntTSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Fam228b-201ENSMUST00000053458 2851 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Fbxl19-201ENSMUST00000033081 3410 ntAPPRIS P2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Arhgef40-204ENSMUST00000182061 4756 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Grk5-201ENSMUST00000003313 3165 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Ece2-201ENSMUST00000003898 3152 ntAPPRIS P3 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Mapk8ip1-202ENSMUST00000111279 3274 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Gemin5-202ENSMUST00000102711 4919 ntAPPRIS ALT2 TSL 5 BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Strap-201ENSMUST00000064910 2650 ntAPPRIS P1 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Kdm6b-201ENSMUST00000094077 6654 ntAPPRIS P1 TSL 5 BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Ints3-203ENSMUST00000196530 3778 ntAPPRIS ALT2 TSL 1 (best) BASIC13.66□□□□□ -0.22
Pcdh1F7BJK1 Tmem198b-201ENSMUST00000051011 2335 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Trim3-205ENSMUST00000147044 2972 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Mtfr2-201ENSMUST00000169712 1991 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Lmo4-203ENSMUST00000121796 1417 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 4933434E20Rik-209ENSMUST00000162114 1411 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Dgkq-201ENSMUST00000053913 4938 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 4930438A08Rik-201ENSMUST00000108834 2093 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Nup62-205ENSMUST00000208626 2708 ntAPPRIS P1 TSL 5 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Nup62-201ENSMUST00000057195 2722 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Trmu-201ENSMUST00000023019 1526 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Ptpn6-210ENSMUST00000174265 1743 ntTSL 5 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Nkx6-1-201ENSMUST00000044125 3138 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Islr2-204ENSMUST00000165276 3989 ntAPPRIS P3 TSL 2 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Pom121l2-202ENSMUST00000117882 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Map2k7-202ENSMUST00000062686 3525 ntTSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Grk6-207ENSMUST00000225925 2769 ntBASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Rnf181-203ENSMUST00000114095 869 ntTSL 3 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Gm16272-201ENSMUST00000128218 388 ntTSL 2 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 BC048679-202ENSMUST00000144156 640 ntAPPRIS ALT2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 U2af1-201ENSMUST00000014684 907 ntAPPRIS P3 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Srgn-205ENSMUST00000162161 694 ntAPPRIS P1 TSL 3 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 U2af1-202ENSMUST00000166526 907 ntAPPRIS ALT2 TSL 2 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Gm20478-201ENSMUST00000173648 1031 ntTSL 3 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Mir3081-201ENSMUST00000175305 84 ntBASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Gm29518-201ENSMUST00000190858 372 ntBASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 AC158538.2-201ENSMUST00000225455 906 ntBASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Pspn-201ENSMUST00000002740 474 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Eif1b-201ENSMUST00000007139 1035 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Arpc1b-211ENSMUST00000196111 1394 ntAPPRIS ALT1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Mif4gd-203ENSMUST00000106507 1656 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Slc18b1-206ENSMUST00000179321 2843 ntTSL 5 BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Edn3-201ENSMUST00000029030 3117 ntAPPRIS P2 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Clec2h-201ENSMUST00000032518 2160 ntAPPRIS P1 TSL 1 (best) BASIC13.65□□□□□ -0.22
Pcdh1F7BJK1 Magix-201ENSMUST00000115695 1342 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Map4k5-202ENSMUST00000110567 4250 ntTSL 5 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Rab11b-203ENSMUST00000173860 1544 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Cuedc2-202ENSMUST00000167861 1941 ntAPPRIS P1 TSL 5 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Cflar-204ENSMUST00000114309 2010 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 F11r-201ENSMUST00000043839 2518 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Sf1-204ENSMUST00000113489 2863 ntTSL 5 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Men1-206ENSMUST00000113502 2652 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Dym-201ENSMUST00000039608 2471 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 4930558J18Rik-201ENSMUST00000181949 2052 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Skap1-205ENSMUST00000107662 1861 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Fam107b-203ENSMUST00000115053 688 ntAPPRIS P1 TSL 3 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Tcp1-207ENSMUST00000143961 614 ntTSL 2 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Gm27177-205ENSMUST00000184792 706 ntTSL 5 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Gm44454-201ENSMUST00000198541 138 ntBASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Vegfc-203ENSMUST00000210831 555 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Zfp930-203ENSMUST00000212312 493 ntTSL 2 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Daxx-208ENSMUST00000174541 2325 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Caprin2-201ENSMUST00000072324 2952 ntAPPRIS ALT2 TSL 5 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 2610206C17Rik-201ENSMUST00000129059 1717 ntTSL 2 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Gm26850-201ENSMUST00000181653 2669 ntTSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Abcf2-201ENSMUST00000030795 2569 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Tm6sf2-202ENSMUST00000110160 1446 ntAPPRIS ALT1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 B3gnt4-201ENSMUST00000031384 1423 ntAPPRIS P1 BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Fam131c-201ENSMUST00000006380 1433 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Auh-201ENSMUST00000021913 1320 ntAPPRIS P1 TSL 1 (best) BASIC13.64□□□□□ -0.23
Pcdh1F7BJK1 Spdef-202ENSMUST00000114870 2070 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Brd3-203ENSMUST00000113941 5289 ntAPPRIS ALT2 TSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Dnase2a-202ENSMUST00000109744 1958 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 A230060F14Rik-202ENSMUST00000190739 1889 ntBASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Ism2-202ENSMUST00000125733 2526 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Mlec-201ENSMUST00000112121 5955 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Ndufv1-201ENSMUST00000042497 1661 ntAPPRIS P2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Dmap1-201ENSMUST00000102687 1566 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Anks1b-205ENSMUST00000179694 2663 ntTSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Ppt2-205ENSMUST00000169067 1392 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Cep170b-211ENSMUST00000222711 6566 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Luc7l3-201ENSMUST00000021226 3373 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Lpcat2-201ENSMUST00000046290 2811 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Klk12-202ENSMUST00000107970 1115 ntAPPRIS P1 TSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Eif4e2-205ENSMUST00000113232 1125 ntTSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Rprl3-201ENSMUST00000157400 290 ntBASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Gm26709-203ENSMUST00000223260 715 ntTSL 5 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Atp5l-201ENSMUST00000043675 544 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Rplp2-201ENSMUST00000084434 964 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Npw-201ENSMUST00000095544 638 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Arhgef33-202ENSMUST00000223878 3253 ntAPPRIS P1 BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Slc35a2-202ENSMUST00000115660 3094 ntAPPRIS ALT2 TSL 1 (best) BASIC13.63□□□□□ -0.23
Pcdh1F7BJK1 Zfp395-201ENSMUST00000066994 4229 ntAPPRIS P1 TSL 1 (best) BASIC13.63□□□□□ -0.23
Retrieved 100 of 76,532 protein–RNA pairs in 25.6 ms