Protein–RNA interactions for Protein: B1AR17

Chd3, Chromodomain helicase DNA-binding protein 3, mousemouse

Predictions only

Length 2,055 aa.

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Protein RNA Prediction (catRAPID) Interaction (Experimental data)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
Chd3B1AR17 Lat2-201ENSMUST00000036362 1637 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Hmgcl-201ENSMUST00000030432 1418 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
Chd3B1AR17 Jup-202ENSMUST00000107403 2386 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Fbxw2-205ENSMUST00000113078 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Tmem82-201ENSMUST00000053263 1671 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Tango6-202ENSMUST00000211979 2722 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Ntn1-202ENSMUST00000108674 5874 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Arl6-202ENSMUST00000099646 1554 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Hoxd12-201ENSMUST00000001878 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Trank1-201ENSMUST00000078626 10520 ntAPPRIS P1 TSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Fbxo44-202ENSMUST00000105705 1034 ntTSL 2 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Sept1-201ENSMUST00000106313 1285 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Esco1-203ENSMUST00000115864 2148 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Gm16191-201ENSMUST00000141445 520 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 6030443J06Rik-204ENSMUST00000195898 786 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 1700017L05Rik-201ENSMUST00000201654 558 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Eef1akmt2-201ENSMUST00000033257 1107 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Cnksr3-201ENSMUST00000015346 3447 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Hsd3b7-202ENSMUST00000106271 1713 ntTSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Sfta3-ps-205ENSMUST00000220379 2187 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Rarg-202ENSMUST00000063339 2718 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Skor1-203ENSMUST00000119146 3610 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Agfg1-201ENSMUST00000063380 2896 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Dcdc2a-201ENSMUST00000036932 2345 ntAPPRIS ALT2 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Tcta-201ENSMUST00000044725 1668 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Krt14-201ENSMUST00000007272 1698 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Prkab1-202ENSMUST00000111999 2026 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Large2-214ENSMUST00000176774 2377 ntAPPRIS ALT2 TSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Nlrx1-203ENSMUST00000169651 3621 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Tmtc4-201ENSMUST00000037726 3416 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Pde4a-201ENSMUST00000003395 2524 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Otop3-201ENSMUST00000019006 2422 ntAPPRIS P3 TSL 2 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Tnnc2-201ENSMUST00000103095 700 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Dnajc8-205ENSMUST00000105939 746 ntTSL 5 BASIC14.8□□□□□ -0.04
Chd3B1AR17 Hoxa13-202ENSMUST00000114416 769 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Gm14268-201ENSMUST00000132465 682 ntTSL 3 BASIC14.8□□□□□ -0.04
Chd3B1AR17 5430405H02Rik-203ENSMUST00000185402 904 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 AC159114.1-201ENSMUST00000220349 266 ntBASIC14.8□□□□□ -0.04
Chd3B1AR17 Gm9949-201ENSMUST00000067743 962 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Ppm1h-206ENSMUST00000161487 2931 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Syp-201ENSMUST00000069520 2591 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Spsb1-203ENSMUST00000105685 1537 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Ccdc106-201ENSMUST00000045543 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
Chd3B1AR17 Adam9-204ENSMUST00000208247 4044 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Slit3-201ENSMUST00000069837 5228 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Fbxo15-204ENSMUST00000224467 1908 ntAPPRIS ALT2 BASIC14.79□□□□□ -0.04
Chd3B1AR17 A830018L16Rik-201ENSMUST00000048613 2779 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Sirt5-203ENSMUST00000220576 1579 ntTSL 5 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Ptpa-201ENSMUST00000042055 2586 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Pqbp1-202ENSMUST00000115654 1374 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Sec24a-202ENSMUST00000064297 2104 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Mbd6-201ENSMUST00000026476 4165 ntAPPRIS P3 TSL 5 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Kcnq4-201ENSMUST00000030376 3919 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
Chd3B1AR17 2810408I11Rik-202ENSMUST00000150749 711 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Gm10576-201ENSMUST00000191927 825 ntBASIC14.79□□□□□ -0.04
Chd3B1AR17 Ndufs6-203ENSMUST00000222930 512 ntTSL 3 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Fam214a-202ENSMUST00000170846 4355 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Ccdc103-201ENSMUST00000021307 1841 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Cbfa2t3-202ENSMUST00000064674 2867 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Camk2d-228ENSMUST00000200171 5396 ntTSL 5 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Oser1-202ENSMUST00000104954 1702 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Tacstd2-201ENSMUST00000058178 1735 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Adrb3-203ENSMUST00000121838 1864 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Pdzd11-201ENSMUST00000015812 1626 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Foxl2-201ENSMUST00000051312 3256 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
Chd3B1AR17 Wdr45b-201ENSMUST00000026173 2321 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Nepro-201ENSMUST00000048788 2866 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Rab11fip3-202ENSMUST00000120691 5103 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
Chd3B1AR17 Gm12981-201ENSMUST00000131733 622 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Slc36a3os-201ENSMUST00000155883 520 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 CT025555.1-201ENSMUST00000225901 1217 ntBASIC14.78□□□□□ -0.04
Chd3B1AR17 Pde6g-201ENSMUST00000026452 900 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Rxfp4-201ENSMUST00000063119 1245 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Chd3B1AR17 Clcn2-201ENSMUST00000007207 3128 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Ifngr2-201ENSMUST00000023687 3254 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Xpo6-213ENSMUST00000168189 4552 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Rmdn1-201ENSMUST00000029888 1734 ntAPPRIS P2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Cacul1-201ENSMUST00000081790 5790 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Slc35f4-205ENSMUST00000146164 2480 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Ilvbl-209ENSMUST00000218885 2233 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Srpr-201ENSMUST00000034541 2993 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Hacd3-201ENSMUST00000036615 2709 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Pld5-202ENSMUST00000111166 1370 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Naa50-203ENSMUST00000159514 3756 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Mtfp1-201ENSMUST00000004868 1411 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Hist1h3e-201ENSMUST00000105107 836 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Chd3B1AR17 Lrrc3c-201ENSMUST00000142268 902 ntAPPRIS P1 TSL 3 BASIC14.78□□□□□ -0.04
Chd3B1AR17 Rbfox2-208ENSMUST00000227930 1218 ntBASIC14.78□□□□□ -0.04
Chd3B1AR17 Prss29-201ENSMUST00000024993 1178 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Rps10-201ENSMUST00000025052 519 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Krtap19-3-201ENSMUST00000075284 526 ntAPPRIS P1 BASIC14.78□□□□□ -0.04
Chd3B1AR17 Mboat7-201ENSMUST00000038608 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Camsap2-203ENSMUST00000192314 4916 ntAPPRIS ALT2 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Sybu-207ENSMUST00000227305 3124 ntAPPRIS ALT2 BASIC14.78□□□□□ -0.04
Chd3B1AR17 Pmpca-201ENSMUST00000076431 3135 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Nptn-201ENSMUST00000085651 2024 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
Chd3B1AR17 Soga3-201ENSMUST00000092629 4105 ntAPPRIS P1 TSL 5 BASIC14.77□□□□□ -0.04
Chd3B1AR17 Pcdhac2-201ENSMUST00000047479 5888 ntAPPRIS P1 TSL 1 (best) BASIC14.77□□□□□ -0.04
Chd3B1AR17 Pias2-201ENSMUST00000114776 2089 ntAPPRIS ALT2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Chd3B1AR17 Slc37a4-203ENSMUST00000213388 2344 ntAPPRIS P2 TSL 1 (best) BASIC14.77□□□□□ -0.04
Retrieved 100 of 76,532 protein–RNA pairs in 33.1 ms